1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGATTGCTTGGATGATTTGGCTTTTGCAATTATGCATGAGATGAGCAAATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttgaagttgttatgggagaaaattgtcatacccatattgtatctcagtttactcagacactgcatgctacaaagcttgatgtatggtgttctc...
species | Zea mays |
transcript | GRMZM2G091563_T01 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TACAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|30306632|gb|CD001305.1|CD001305
genomic: TACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|32164812|gb|CD670451.1|CD670451
genomic: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|60337054|gb|DN204027.1|DN204027
genomic: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|4730783|gb|AI649949.1|AI649949
genomic: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: GAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCNCCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|31909603|gb|CD651001.1|CD651001
genomic: GAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: ACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|83279407|gb|DV943415.1|DV943415
genomic: ACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: CAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|32848125|gb|CD987806.1|CD987806
genomic: CAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTACTGTTGTCGAGEST: gi|29544108|gb|CB604488.1|CB604488
genomic: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: TACAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCNCCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|60355748|gb|DN222721.1|DN222721
genomic: TACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAGEST: gi|5895629|gb|AW036875.1|AW036875
genomic: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
EST: AATTGTCATACCGGGTTACGGAGGAAGATGTTATCCGTGCACGTAATCAG CTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
genomic: AATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttg ... acaatttcagCTGAAGTCCTCAATCCAACTCCACCTTGATGGTTCAACTGCTGTTGTCGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGATTGCTTGGATGATTTGGCTTTTGCAATTATGCATGAGATGAGCAAATTGTCATACCGGGTTACAGAGGAAGATGTTATCCGTGCACGTAATCAGgtaatgtttgaagttgttatgggagaaaattgtcatacccatattgtatctcagtttactcagacactgcatgctacaaagcttgatgtatggtgttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggagaaaa