1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgggttctgcaatttttcactctatacttagttgtgctatttttcatgaacccacattatttcaccattgtatgctctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCAATGGAGCATCATGGGTAGATCCTGATTCTGTTGCACTGATGGTTATGC
species | Zea mays |
transcript | GRMZM2G091563_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|32920213|gb|CF025025.1|CF025025
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|32921737|gb|CF026549.1|CF026549
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|32920952|gb|CF025764.1|CF025764
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAGCCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|32826457|gb|CD966135.1|CD966135
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|32922064|gb|CF026876.1|CF026876
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|60355748|gb|DN222721.1|DN222721
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|32920826|gb|CF025638.1|CF025638
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAGCCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|32922080|gb|CF026892.1|CF026892
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCEST: gi|5895629|gb|AW036875.1|AW036875
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
EST: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAG GTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
genomic: CAACAAACATGTTGGTCGCTAAGCAACCAGCCTCTTTCACGGGTTCTGAGgtgggttctg ... ctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTC
ttgtgctatttttcatgaacccacattatttcaccattgtatgctctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCAATGGAGCATCATGGGTAGATCCTGATTCTGTTGCACTGATGGTTATGC
tgctctctt CT-rich tract
tatttttcat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgggttctgcaatttttcactctatacttagttgtgctatttttcatgaacccacattatttcaccattgtatgctctcttggtagGTTCGAATCATTGACGATGACATGCCCCTTGCTCAATTTGCTGTTGCTTTCAATGGAGCATCATGGGTAGATCCTGATTCTGTTGCACTGATGGTTATGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA