Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgttcctcaacagtatcttaaccgaattatttgagtctcagtaacctcgatctaatcatttgatattctcctctccagGTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGCTCTCTCAGAAACCTACATGCAAATATACGAGCAACACGAATGAGTAATG

Basic information

species Zea mays
transcript GRMZM2G091151_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091151_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 3'ss of exon 8
gtacgttcctcaacagtatcttaaccgaattattt-----gagtct-cagtaacctcgatct----aatcatttgatattctcctctccagGTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGCTCTCTCAGAAACCTACATGCAAATATACGAGCAACACGAATGAGTAATG
||| | |||||| |    || || |     |||||     | | || ||||      |  ||    ||||||||   ||||     |  |||||||| ||||| ||||| |||||||| ||||| |||||||| ||||| ||||| |||||| |||||||||||||||||||||| ||||||||||| |||
gtatgctcctcagcttattcctagcatgggtatttattttgtgcctgcagttgagagggccttgtaaatcattttccattccttattttagGTATGAAATGCAAGATCTTCATGTTACCGAGACTCTTCCTCAGATGGTAGCTCTTTCAGAAGCCTACATGCAAATATACGAGCAGCACGAATGAGTGATG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348304|gb|DN215277.1|DN215277
EST:     TTGTCCATGATGGCAAACCTGGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG
genomic: GAGTATTTGTACAGCGGAAATCAGAAGAGGCCTGgtacgttcct ... tcctctccagGTATGAGATGC
EST: gi|8102817|gb|AW927497.1|AW927497
EST:     TTGTCCATGATGGCAAACCTGGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG
genomic: GAGTATTTGTACAGCGGAAATCAGAAGAGGCCTGgtacgttcct ... tcctctccagGTATGAGATGC
EST: gi|22491133|gb|BU051056.1|BU051056
EST:     TTGTCCATGATGGCAAACCTGGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG
genomic: GAGTATTTGTACAGCGGAAATCAGAAGAGGCCTGgtacgttcct ... tcctctccagGTATGAGATGC
EST: gi|8102816|gb|AW927496.1|AW927496
EST:     GGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG                         GTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGC
genomic: GGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTGgtacgttcct ... tcctctccagGTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGC
EST: gi|211436060|gb|FL473030.1|FL473030
EST:     TTGTCCATGATGGCAAACCTGGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG
genomic: GAGTATTTGTACAGCGGAAATCAGAAGAGGCCTGgtacgttcct ... tcctctccagGTATGAGATGC
EST: gi|76927561|gb|DV171298.1|DV171298
EST:     TTGTCCATGATGGCAAACCTGGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG
genomic: GAGTATTTGTACAGCGGAAATCAGAAGAGGCCTGgtacgttcct ... tcctctccagGTATGAGATGC
EST: gi|12046728|gb|BF728867.1|BF728867
EST:     TGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG                         GTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGC
genomic: TGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTGgtacgttcct ... tcctctccagGTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGC
EST: gi|31250431|gb|CD219455.1|CD219455
EST:     TTGTCCATGATGGCAAACCTGGCGAGGGATGCTACAGAGTATTTGTACAGCGGAAATCAGAAGAGGCCTG
genomic: GAGTATTTGTACAGCGGAAATCAGAAGAGGCCTGgtacgttcct ... tcctctccagGTATGAGATGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaattatttgagtctcagtaacctcgatctaatcatttgatattctcctctccagGTATGAGATGCAGGATCTCCATGTTACTGAGACCCTTCCTCAAATGGTTGCTCTCTCAGAAACCTACATGCAAATATACGAGCAACACGAATGAGTAATG
                                        tattctcctctcc  CT-rich tract
                             taatcatttgatatt  TA-rich tract