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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGTTCATTAATCTTCAAACTGAGAAGGCTTACTGTCTTCCTGATGGATATGAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttcattgcttctaacattacatttcaatagcacttgatggctttggcaacacaggctgctaattagtgtactgttctggcag

Basic information

species Zea mays
transcript GRMZM2G091151_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 5'ss of exon 2
TGTTCATTAATCTTCAAACTGAGAAGGCTTACTGTCTTCCTGATGGATATGAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttcattgcttctaacattacatttcaatagcacttgatggctttggcaacacaggctgctaattagtgtactgttctggcag
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| || ||||||||||| |  || |   |  |  ||| | |  | ||     ||| |      || |  |||  |  | ||| |||| ||    ||||||
TGTTCATTAACCTTCAAACTGAGAAAGCTTACTGTCTTCCTGATGGATATGAGATAAATGATCCATCATTGGAAGATATTCGACATGTTCTCAACCCAAGgtgcttttctatcgtcgcccatgtta-actctagtaa----tga-gctcagagctatgcagttttttgattggtgtgct---ttggcag

upper sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA10G08500.2 (Glycine max), 5'ss of exon 3
TGTTCATTAATCTTCAAACTGAGAAGGCTTACTGTCTTCCTGATGGATATGAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtg---cttcttcattgcttctaacattacatttcaatagcacttgatggctttggcaacacag----gctgcta-attagtgtactgtt--ctggcag------
| |  || ||||| |  ||||| || |  ||||||||||||||||| ||||| ||||||||||| || ||||| || ||||| |||||  | ||||||||||    ||  ||  ||   | |  | || | ||       || ||      ||| |||||| |     | | |||   |  |   || ||  |||| |       
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGTCATGTCTTAAATCCAAGgttgatctatttttttatatatggctttgctttctgcagacaatt-----ttttagcaacatatttctgtttctatggtcatcagctattggctggtaacaatgt

upper sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 2
lower sequence: GLYMA13G22190.1 (Glycine max), 5'ss of exon 3
TGTTCATTAATCTTCAAACTGAGAAGGCTTACTGTCTTCCTGATGGATATGAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttct-tcattgcttctaacattacatttcaatagcacttgatgg--------ctttggcaacacaggctgctaattagtgtactgttctggcag--
| |  || ||||| |  ||||| || |  ||||||||||||||||| ||||| ||||||||||| || ||||| || |||||| ||||  | ||||||||||   ||| |  ||  ||      ||  | ||     |  |||| ||          ||| |||||| |      |   ||  ||  |   |     |  
TCTATATCAATCTCCGCACTGAAAAAGTCTACTGTCTTCCTGATGGTTATGAAATTAATGATCCTTCATTAGATGACATTCGAAATGTCTTAAATCCAAGgttggtctattgttttttaactttttttaatttggctgtgcttgctgcagacaattttttagcaacatatttctgtttctatggtcatcagccattggct

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211066153|gb|FL067272.1|FL067272
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
EST: gi|211066159|gb|FL067278.1|FL067278
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
EST: gi|211068890|gb|FL067279.1|FL067279
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTC-CTAAAGGAGCAGGTTCTAAATCTTGACAAAAAATAAGCA
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAA-GGAGCAGGTTCTAAATCTTGACAAAAA-TAAGCA
EST: gi|211068893|gb|FL067282.1|FL067282
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTC-CTAAAGGAGCAGGTTCTAAATCTTGACAAAAAATAAGCA
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAA-GGAGCAGGTTCTAAATCTTGACAAAAA-TAAGCA
EST: gi|211066145|gb|FL067264.1|FL067264
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
EST: gi|211066152|gb|FL067271.1|FL067271
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
EST: gi|211066151|gb|FL067270.1|FL067270
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
EST: gi|211066150|gb|FL067269.1|FL067269
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
EST: gi|211066157|gb|FL067276.1|FL067276
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GGTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGNGGTCTAN
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
EST: gi|211066156|gb|FL067275.1|FL067275
EST:     GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAG                         GTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG
genomic: GAGATTAATGATCCATCGTTAGAAGATATTCGACATGTTCTGAATCCAAGgtgcttcttc ... gttctggcagGTTCACTAAGGAGCAGGTTCTAAATCTTGACAAAAATAAGCAGTGGTCTAG