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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGAATGAGGTACCGAGTCACTAGACTGCCGAAGTATCTGATCCTTCATATGCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAGgtgagattttacacttgcttgattaactttgctgtcgcctgtcatgctccatggtagctgattttaatatgttttaatattcaacttggcag

Basic information

species Zea mays
transcript GRMZM2G091151_T01
intron # 7
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 7
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 5'ss of exon 7
CGAATGAGGTACCGAGTCACTAGACTGCCGAAGTATCTGATCCTTCATATGCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAGgtgagattttacacttgcttgattaactttgctgtcgcctgtcatgctccatggtagctgattttaatatgttttaatattcaacttggcag
|| |||||||| |||||||  ||||| || ||||||||||||||||| |||||| ||||||||||||||||||| ||||| ||||| || |||||||||||| | ||      |||| ||   | | ||   |  |  |||   | | |  |||||  |  || ||| ||||||  ||||| | |||  |||
CGTATGAGGTATCGAGTCATCAGACTTCCAAAGTATCTGATCCTTCACATGCGACGGTTTACCAAAAATAACTTCTTTGTAGAGAAGAATCCTACTCTAGgtaaaatc-----cttgttt---tgatttaattagcctctgcagtccact-tggtacat--ttctaagatgtttacatatttatctta-cag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60348304|gb|DN215277.1|DN215277
EST:     GCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAG                         TTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA
genomic: GCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAGgtgagatttt ... aacttggcagTTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA
EST: gi|76927561|gb|DV171298.1|DV171298
EST:     GCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAG                         TTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA
genomic: GCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAGgtgagatttt ... aacttggcagTTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA
EST: gi|31250431|gb|CD219455.1|CD219455
EST:     GCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAG                         TTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA
genomic: GCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAGgtgagatttt ... aacttggcagTTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA
EST: gi|71434280|gb|DR815330.1|DR815330
EST:     GAAGGTTTTACCAAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAG                         TTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA
genomic: GAAGGTTT-ACCAAAAA-TAACTTTTTTGTCGAGAAAAACCCTACTCTAGgtgagatttt ... aacttggcagTTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA
EST: gi|76927562|gb|DV171299.1|DV171299
EST:     GCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAA-CCCTACTCTAG                         TTAATTTTCCTGTGAAGAACTTGGAGTTGAGGGACTACATTCCATTACCTA
genomic: GCGAAGGTTTACCAAAAATAACTTTTTTGTCGAGAAAAACCCTACTCTAGgtgagatttt ... aacttggcagTTAATTTTCCTGTGAAGAACTTGGAGTTGAAGGACTACATTCCATTACCTA