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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTAATCCCTGAAAACTATCAGCATAGCAAATCACCATTGGTTCATCGTTTTGGGGAATTGACACGTAAGATTTGGCATGCTAGGAACTTCAAGGGCCAGgttggtttgttaaatcactttgcagcatgtttcatgctaccactttgtatgaagatttgtctaaaccaataatgcaacaaccattttttctgttcag

Basic information

species Zea mays
transcript GRMZM2G091151_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G091151_T01 (Zea mays), 5'ss of exon 4
lower sequence: LOC_Os09g24250.1 (Oryza sativa), 5'ss of exon 4
TCTAATCCCTGAAAACTATCAGCATAGCAAATCACCATTGGTTCATCGTTTTGGGGAATTGACACGTAAGATTTGGCATGCTAGGAACTTCAAGGGCCAGgttggtttgttaaatcactttgcagcatgttt-catgctaccactttgtatgaagatttgtctaaaccaataatgcaacaaccattttttctgttcag
||| ||||||||||| |||| |||||||||||| |||||||||||||| ||||| ||| | || || || || |||||||| |||||||||||||||||||||||||| |||  | |  | || |||||    |||  |    || |   |  |  |      | ||  | ||   ||||    |  ||| ||| |||
TCTCATCCCTGAAAATTATCGGCATAGCAAATCCCCATTGGTTCATCGATTTGGAGAACTAACTCGCAAAATCTGGCATGCAAGGAACTTCAAGGGCCAGgttggttttttag-tgagatagctgcatgccagcatatttgtgctgttcctctacctccacaaatactcaaaagttaacatgt-tgctttttgtgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76927562|gb|DV171299.1|DV171299
EST:     TTGGGGAATTGACACGTAAGATTTGGCATGCTAGGAACTTCAAGGGCCAG                         GTTAGTCCACATGAATTTCTGCAAGCAGTTATGAAGGCCAGCGACAAAAAG
genomic: TTGGGGAATTGACACGTAAGATTTGGCATGCTAGGAACTTCAAGGGCCAGgttggtttgt ... ttctgttcagGTTAGTCCACATGAATTTCTGCAAGCAGTTATGAAGGCCAGCGACAAAAAG