1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...acatcattcaaataaatatgctgtgctgtatagaatggcggttgcaattttgaaaggtaacaaacaatttttcacgcctttttgtatcactactctgcagCTCTACCCTGCACCGTCTCGGAACACCGGTGTTGGGATCACTTCTTCCCTTGGTCGGATTGGCAGCATAGTTTCACCTCTTGTTATTGTTGGCTTGTTAG
species | Zea mays |
transcript | GRMZM2G087479_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GGACTTGTATCATGGGCAGCTTTGCAGTTCTATATGTTTATACACCTGAG CTTTACCCTGCACCGTCTCGGAACACCGGTGTTGGGATCACTTCTTCCCTTEST: gi|78125243|gb|DV543627.1|DV543627
genomic: GGACTTGTATCATGGGCAGCTTTGCAGTTCTATATGTTTATACACCTGAGgtcagtaccc ... tactctgcagCTCTACCCTGCACCGTCTCGGAACACCGGTGTTGGGATCACTTCTTCCCTT
EST: GGACTTGTATCATGGGCAGCTTTGCAGTTCTATATGTTTATACACCTGAG CTCTACCCTGCACCGTCTCGGAACACCGGTGTTGGGATCACTTCTTCCCTTEST: gi|71770232|gb|DR968169.1|DR968169
genomic: GGACTTGTATCATGGGCAGCTTTGCAGTTCTATATGTTTATACACCTGAGgtcagtaccc ... tactctgcagCTCTACCCTGCACCGTCTCGGAACACCGGTGTTGGGATCACTTCTTCCCTT
EST: GGACTTGTATCATGGGCAGCTTTGCAGTTCTATATGTTTATACACCTGAG CTCTACCCTGCACCGTCTGGGAACACCGGTGTTGGGATCACTTCTTCCCTT
genomic: GGACTTGTATCATGGGCAGCTTTGCAGTTCTATATGTTTATACACCTGAGgtcagtaccc ... tactctgcagCTCTACCCTGCACCGTCTCGGAACACCGGTGTTGGGATCACTTCTTCCCTT
aattttgaaaggtaacaaacaatttttcacgcctttttgtatcactactctgcagCTCTACCCTGCACCGTCTCGGAACACCGGTGTTGGGATCACTTCTTCCCTTGGTCGGATTGGCAGCATAGTTTCACCTCTTGTTATTGTTGGCTTGTTAG
aggtaac putative branch site (score: 1)
ctactct putative PPT
taacaaacaattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatcattcaaataaatatgctgtgctgtatagaatggcggttgcaattttgaaaggtaacaaacaatttttcacgcctttttgtatcactactctgcagCTCTACCCTGCACCGTCTCGGAACACCGGTGTTGGGATCACTTCTTCCCTTGGTCGGATTGGCAGCATAGTTTCACCTCTTGTTATTGTTGGCTTGTTAG
- - - - -aaataaa
- - - - - - - - tatgctg
- - - - - - - - - - - -tgctgta
- - - - - - - - - - - - - - - - - - - cggttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -taacaaa