1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GTTCATAGAGTTTGTCCCTGCTGCCAAAAGAGGTACCTGGATGGTTGTTTTCCATGCTTGTTGGACTGTGGGAACAATATTGGAGGCTCTTCTTGCGTGGgtatttttcctttcatcaattgtatgttaattatcttaatttttttgggaagtgcatgttaattatcttagctgcacgtccttagaaaagattcatcaaagattgaatatcactcatgtgcttgcaggattcgcagtagttaacttaatctttaccttggcattgtatattcttaatgcag
species | Zea mays |
transcript | GRMZM2G087479_T01 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: TCCATGCTTGTTGGACTGTGGGAACAATATTGGAGGCTCTTCTTGCGTGG GCTATCATGCCAGTACTTGGATGGAGGTGGTTGCTTGCATTGTCCTCAGCGEST: gi|89253033|gb|DY624819.1|DY624819
genomic: TCCATGCTTGTTGGACTGTGGGAACAATATTGGAGGCTCTTCTTGCGTGGgtatttttcc ... cttaatgcagGCTATCATGCCAGTACTTGGATGGAGGTGGTTGCTTGCATTGTCCTCAGCG
EST: TCCATGCTTGTTGGACTGTGGGAACAATATTGGAGGCTCTTCTTGCGTGG GCTATCATGCCAGTACTTGGATGGAGGTGGTTGCTTGCATTGTCCTCAGCGEST: gi|78125244|gb|DV543628.1|DV543628
genomic: TCCATGCTTGTTGGACTGTGGGAACAATATTGGAGGCTCTTCTTGCGTGGgtatttttcc ... cttaatgcagGCTATCATGCCAGTACTTGGATGGAGGTGGTTGCTTGCATTGTCCTCAGCG
EST: TCCATGCTTGTTGGACTGTGGGAACAATATTGGAGGCTCTTCTTGCGTGG GCTATCATGCCAGTACTTGGATGGAGGTGGTTGCTTGCATTGTCCTCAGCG
genomic: TCCATGCTTGTTGGACTGTGGGAACAATATTGGAGGCTCTTCTTGCGTGGgtatttttcc ... cttaatgcagGCTATCATGCCAGTACTTGGATGGAGGTGGTTGCTTGCATTGTCCTCAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTCATAGAGTTTGTCCCTGCTGCCAAAAGAGGTACCTGGATGGTTGTTTTCCATGCTTGTTGGACTGTGGGAACAATATTGGAGGCTCTTCTTGCGTGGgtatttttcctttcatcaattgtatgttaattatcttaatttttttgggaagtgcatgttaattatcttagctgcacgtccttagaaaagattcatcaaagattgaatatcactcatgtgcttgcaggattcgcagtagttaacttaatctttaccttggcattgtatattcttaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG