1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatttttaaactaaaacgcgacaaataaaaaaaaaaggacagagtatttgtttacccaagacgacgctacaacttataattcgatgtgtgctatttccagGACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAGCGCCTTCTCGCCCAACTACGCATCCTTACTCACCCTTCGCTTTGTTGTT
species | Zea mays |
transcript | GRMZM2G087479_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCATCGGGTCCATCGCCGGAGGCCTCATCGCGGACAGATACGGCAGGAG GACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAGEST: gi|71439290|gb|DR820340.1|DR820340
genomic: CTCATCGGGTCCATCGCCGGAGGCCTCATCGCGGACAGATACGGCAGGAGgtagcacaaa ... ctatttccagGACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAG
EST: CTCATCGGGTCCATCGCCGGAGGCCTCATCGCGGACAGATACGGCAGGAG GACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAGEST: gi|89253033|gb|DY624819.1|DY624819
genomic: CTCATCGGGTCCATCGCCGGAGGCCTCATCGCGGACAGATACGGCAGGAGgtagcacaaa ... ctatttccagGACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAG
EST: CTCATCGGGTCCATCGCCGGAGGCCTCATCGCGGACAGATACGGCAGGAG GACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAGEST: gi|78125244|gb|DV543628.1|DV543628
genomic: CTCATCGGGTCCATCGCCGGAGGCCTCATCGCGGACAGATACGGCAGGAGgtagcacaaa ... ctatttccagGACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAG
EST: CTCATCGGGTCCATCGCCGGAGGCCTCATCGCGGACAGATACGGCAGGAG GACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAG
genomic: CTCATCGGGTCCATCGCCGGAGGCCTCATCGCGGACAGATACGGCAGGAGgtagcacaaa ... ctatttccagGACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAG
atttgtttacccaagacgacgctacaacttataattcgatgtgtgctatttccagGACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAGCGCCTTCTCGCCCAACTACGCATCCTTACTCACCCTTCGCTTTGTTGTT
ctatttcc CT-rich tract
tacaacttataatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttttaaactaaaacgcgacaaataaaaaaaaaaggacagagtatttgtttacccaagacgacgctacaacttataattcgatgtgtgctatttccagGACCGGTTTCCTTTTCACTGCAGTGGTCACTGCCGTATTTGGTTTGCTTAGCGCCTTCTCGCCCAACTACGCATCCTTACTCACCCTTCGCTTTGTTGTT
- - - -aaactaa
- - - - - - - - - - - aaataaa
- - - - - - - - - - - - - aaaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cgctaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgatgtg