1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaactgactgttcacgcacaggcacagcacacacgtacggccctgaactgaagctgatcactgcagcgaggccgggcgaattaaacgaccgaccgatttgtttgtggactaatttcagCGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGCGTGCTGGTGTGCGGACCGCAGGGGCTGCAGACGAGCGTAGCGAGGGAGTG
species | Zea mays |
transcript | GRMZM2G068557_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCGCCGCCCTGCGGACGACCCGGTACGGCTGCCGGCCGAACTTCGAAG CGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGCGEST: gi|13381951|gb|BG458626.1|BG458626
genomic: CCTCGCCGCCCTGCGGACGACCCGGTACGGCTGCCGGCCGAACTTCGAAGgtaactgact ... ctaatttcagCGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGCG
EST: CCTCGCCGCCCTGCGGACGACCCGGTACGGCTGCCGGCCGAACTTCGAAG CGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGCGEST: gi|211234048|gb|FL287106.1|FL287106
genomic: CCTCGCCGCCCTGCGGACGACCCGGTACGGCTGCCGGCCGAACTTCGAAGgtaactgact ... ctaatttcagCGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGCG
EST: CCTCGCCGCCCTGCGGACGACCCGGTACGGCTGCCGGCCGAACTTCGAAG CGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGCC
genomic: CCTCGCCGCCCTGCGGACGACCCGGTACGGCTGCCGGCCGAACTTCGAAGgtaactgact ... ctaatttcagCGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGC-
cagcgaggccgggcgaattaaacgaccgaccgatttgtttgtggactaatttcagCGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGCGTGCTGGTGTGCGGACCGCAGGGGCTGCAGACGAGCGTAGCGAGGGAGTG
gactaat putative branch site (score: 19)
aattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactgactgttcacgcacaggcacagcacacacgtacggccctgaactgaagctgatcactgcagcgaggccgggcgaattaaacgaccgaccgatttgtttgtggactaatttcagCGGAGTTCGCGGCGTTCGCGGAGCGCGCCGGGGACGCGGCGGACGTGGGCGTGCTGGTGTGCGGACCGCAGGGGCTGCAGACGAGCGTAGCGAGGGAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG