1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATACCACGTCTGGTTGGGGCATCTCACGATGGCTCTATTTACATTGCATGGCTTGTTCTATGTGATCTCATGGTCCATGCAAGGGCGCCTCCGTGAAGAAgtaagtgcaaagtgatttagagccattcagggctaatgatttgcgacaattaaggaaaacactgtctaataaaccacacaatgaaaaaatttggagtgta...
species | Zea mays |
transcript | GRMZM2G068557_T01 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCTTGTTCTATGTGATCTCATGGTCCATGCAAGGGCGCCTCCGTGAAGAA CTGAGACAATGGAAGGAAATTGGAGTAGCAAACCTGCCTGGTGTGATCAGCEST: gi|149014577|gb|EE044221.2|EE044221
genomic: GCTTGTTCTATGTGATCTCATGGTCCATGCAAGGGCGCCTCCGTGAAGAAgtaagtgcaa ... ttttgtatagCTGAGACAGTGGAAGGAAATTGGAGTAGCAAACCTGCCTGGTGTGATCAGC
EST: GCTTGTTCTATGTGATCTCATGGTCCATGCAAGGGCGCCTCCGTGAAGAA CTGAGACAGTGGAAAGGAAATTGGAGTAGCAAACCTGCCTTGGTGTGATCAEST: gi|149088601|gb|EE177718.2|EE177718
genomic: GCTTGTTCTATGTGATCTCATGGTCCATGCAAGGGCGCCTCCGTGAAGAAgtaagtgcaa ... ttttgtatagCTGAGACAGTGGAA-GGAAATTGGAGTAGCAAACCTGCCT-GGTGTGATCA
EST: GCTTGTTCTATGTGATCTCATGGTCCATGCAAGGGCGCCTCCGTGAAGAA CTGAGACAGTGGAAGGAAATTGGAGTAGCAAACCTGCCTGGTGTGATCAGC
genomic: GCTTGTTCTATGTGATCTCATGGTCCATGCAAGGGCGCCTCCGTGAAGAAgtaagtgcaa ... ttttgtatagCTGAGACAGTGGAAGGAAATTGGAGTAGCAAACCTGCCTGGTGTGATCAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATACCACGTCTGGTTGGGGCATCTCACGATGGCTCTATTTACATTGCATGGCTTGTTCTATGTGATCTCATGGTCCATGCAAGGGCGCCTCCGTGAAGAAgtaagtgcaaagtgatttagagccattcagggctaatgatttgcgacaattaaggaaaacactgtctaataaaccacacaatgaaaaaatttggagtgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaggaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgaaaaa