1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaaagagccagtccccttgctctgcgttaatcactgttccatttctgttgtcgcggttccttcagggcttgaacaattgcctcttgtgttctacagGCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTATCGTTCTTGCAGTGGCACCCGTTCAGTGTATCTTCAAGTCCCATGGATGG
species | Zea mays |
transcript | GRMZM2G068557_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAA GCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTATEST: gi|32831308|gb|CD970986.1|CD970986
genomic: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAAgtaaagagcc ... tgttctacagGCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTAT
EST: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAA GCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTATEST: gi|149101800|gb|EE287395.2|EE287395
genomic: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAAgtaaagagcc ... tgttctacagGCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTAT
EST: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAA GCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTATEST: gi|110531322|gb|EE035506.1|EE035506
genomic: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAAgtaaagagcc ... tgttctacagGCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTAT
EST: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCCAAACCAGCAA GCCTCCCACTACAATGCTTTGAGTTTCATCTTCATTEST: gi|32850067|gb|CD989748.1|CD989748
genomic: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAAgtaaagagcc ... tgttctacagGCCTCC-ACTACAATGCTTTGAGTTTCATCTTCATT
EST: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAA GCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTATEST: gi|32850080|gb|CD989761.1|CD989761
genomic: CGCCTGCCGCCCGTGTGGGACGGTGGAGCTAGTATTCTCAAAACCAGCAAgtaaagagcc ... tgttctacagGCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTAT
EST: CTAGTATTCTCAAAACCAGCAA GCCTCCACTACAATGCTNTGAGTTTCATCTTCATTCAAGTGCGCGAGCTAT
genomic: CTAGTATTCTCAAAACCAGCAAgtaaagagcc ... tgttctacagGCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTAT
tttctgttgtcgcggttccttcagggcttgaacaattgcctcttgtgttctacagGCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTATCGTTCTTGCAGTGGCACCCGTTCAGTGTATCTTCAAGTCCCATGGATGG
cctcttgt CT-rich tract
aacaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaagagccagtccccttgctctgcgttaatcactgttccatttctgttgtcgcggttccttcagggcttgaacaattgcctcttgtgttctacagGCCTCCACTACAATGCTTTGAGTTTCATCTTCATTCAAGTGCGCGAGCTATCGTTCTTGCAGTGGCACCCGTTCAGTGTATCTTCAAGTCCCATGGATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA