1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tactgtagatttagcctcataggcaatcactgcagaagttgtgttgcctcactcacacacaccaatgttgaaaattaaacaacggatttttttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTCTGCATGCTCTTCCTCTTCCTGCCAGTCGCCCGAGGCTCGGTTCTCTTA
species | Zea mays |
transcript | GRMZM2G068557_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|149097278|gb|EE183101.2|EE183101
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|149113069|gb|EE191505.2|EE191505
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|149080339|gb|EE169357.2|EE169357
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|50329460|gb|CO524586.1|CO524586
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|211358194|gb|FL287114.1|FL287114
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GACGCTGTGAGCCTTGTCTCGAAATTTGACATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTEST: gi|149014577|gb|EE044221.2|EE044221
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|148930967|gb|EC873482.2|EC873482
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGGTGTTEST: gi|149088601|gb|EE177718.2|EE177718
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|148964973|gb|EC906060.2|EC906060
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|211234051|gb|FL287109.1|FL287109
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GACGCTGTGAGCCTTGTCTCGAAATTTGACATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATEST: gi|149086545|gb|EE176089.2|EE176089
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCAT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|149088071|gb|EE177251.2|EE177251
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTTGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|148949541|gb|EC895005.2|EC895005
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTEST: gi|148955766|gb|EC901465.2|EC901465
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
EST: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAG TGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
genomic: GAAGCTGTGAGCCTTGTCTCGAAATTTGATATCCCATCAATGACTGAGAGgtatgttcta ... tttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTT
gcctcactcacacacaccaatgttgaaaattaaacaacggatttttttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTCTGCATGCTCTTCCTCTTCCTGCCAGTCGCCCGAGGCTCGGTTCTCTTA
cactcac putative branch site (score: 37)
tttttttcttgc putative PPT
aatgttgaaaattaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tactgtagatttagcctcataggcaatcactgcagaagttgtgttgcctcactcacacacaccaatgttgaaaattaaacaacggatttttttcttgcagTGAATTGATACTGGATGTCATTGGCCTCCGTTTAGGGGCGGTTGGGTTGTTCTGCATGCTCTTCCTCTTCCTGCCAGTCGCCCGAGGCTCGGTTCTCTTA
- - - - - - - - - - - - - - actgcag
- - - - - - - - - - - - - - - - - - - -tgtgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - -cacacca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaacg