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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgtctccccaaataatatcttatgttcaagtgagctatgcatgtcagatttaatttatggagtgaagaatttactttgtaatcaagaacttccatctaacattaactgttgatatttttttatgttcaagtgtaaccttgcttaccactttcatgtgttctataaatccag

Basic information

species Zea mays
transcript GRMZM2G067067_T07
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211009144|gb|FL186797.1|FL186797
EST:     TAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: TAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|211454373|gb|FK947277.1|FK947277
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTC
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTC
EST: gi|74233886|gb|DT641800.1|DT641800
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|211454372|gb|FK947276.1|FK947276
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTT
EST: gi|60349328|gb|DN216301.1|DN216301
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|32864042|gb|CF003724.1|CF003724
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|12973745|gb|BG268634.1|BG268634
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|6827963|gb|AW331606.1|AW331606
EST:     AGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTCCAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: AGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|6342613|gb|AW165437.1|AW165437
EST:     ACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: ACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
EST: gi|74233885|gb|DT641799.1|DT641799
EST:     CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAG                         GTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT
genomic: CAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgt ... ataaatccagGTTACAAGGCCGTCAAATTTCCAGGATTTCTACATATATGCATTTCGTTAT

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GATGAATGGAGAGCTGGTTTGAAAGCTCTTCGAGCAGACAGCATCAGTAAACTGAAGAAAGCATTTCCTGAACTGGTTCAAGAGgtgattctgtctccccaaataatatcttatgttcaagtgagctatgcatgtcagatttaatttatggagtgaagaatttactttgtaatcaagaacttccatctaacattaactgttgatatttttttatgttcaagtgtaaccttgcttaccactttcatgtgttctataaatccag

- - - - - - - - - - - - - - - - - - - - - - - - -  CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA