1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gttgcatgcagccatgcgctacagagtttggagaggcatgtctattatactaaattactaatgcaaccttactggtcgtatttttctcctgctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG
species | Zea mays |
transcript | GRMZM2G067067_T07 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA CCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGAEST: gi|74233886|gb|DT641800.1|DT641800
genomic: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGAgtaagttttt ... gctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
EST: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA CCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGAEST: gi|211454372|gb|FK947276.1|FK947276
genomic: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGAgtaagttttt ... gctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
EST: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA CCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGAEST: gi|32864042|gb|CF003724.1|CF003724
genomic: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGAgtaagttttt ... gctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
EST: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA CCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGAEST: gi|74233885|gb|DT641799.1|DT641799
genomic: ATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGAgtaagttttt ... gctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
EST: AATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA CCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
genomic: AATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGAgtaagttttt ... gctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGA
tatactaaattactaatgcaaccttactggtcgtatttttctcctgctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG
tatttttctcctgct CT-rich tract
taaattactaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgcatgcagccatgcgctacagagtttggagaggcatgtctattatactaaattactaatgcaaccttactggtcgtatttttctcctgctgggacagCCCAGAAGGCATTGAAACACTCTGTTCTCACCTTGAAGTTCCCCACACCGACGTTAGGATTCTAATGTTAGCATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG