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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattgtctaatgtacatattactgccatcaacttaattttgtcatctatatttgtgctttctatttagctgtttgtgaacattttcactattatttgcagGCCCTACTAAAGCAGTTTCCAAGGAAGTAGAACGGATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA

Basic information

species Zea mays
transcript GRMZM2G067067_T07
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211454373|gb|FK947277.1|FK947277
EST:     GAGGCGCGCCTCGAAGAAATCCTTGTCGTCTGCCGCGACCGCTAGCGCTG                         GCCCTACTAAAGCAGTTTCCAAGGAAGTAGAACGGATTGATCAATTTTTCT
genomic: GAGGCGCGCCTCGAAGAAATCCTTGTCGTCTGCCGCGACCGCTAGCGCTGgtaccgcccc ... ttatttgcagGCCCTACTAAAGCAGTTTCCAAGGAAGTAGAACGGATTGATCAATTTTTCT
EST: gi|74233886|gb|DT641800.1|DT641800
EST:     AGAG-GCGCCTCGAAGAAATCCTTGTCGTCTGCCGCGACCGCTAGCGCTG                         GCCCTACTAAAGCAGTTTCCAAGGAAGTAGAACGGATTGATCAATTTTTCT
genomic: AG-GCGCGCCTCGAAGAAATCCTTGTCGTCTGCCGCGACCGCTAGCGCTGgtaccgcccc ... ttatttgcagGCCCTACTAAAGCAGTTTCCAAGGAAGTAGAACGGATTGATCAATTTTTCT
EST: gi|211454372|gb|FK947276.1|FK947276
EST:     GAGGCGCGCCTCGAAGAAATCCTTGTCGTCTGCCGCGACCGCTAGCGCTG                         GCCCTACTAAAGCAGTTTCCAAGGAAGTAGAACGGATTGATCAATTTTTCT
genomic: GAGGCGCGCCTCGAAGAAATCCTTGTCGTCTGCCGCGACCGCTAGCGCTGgtaccgcccc ... ttatttgcagGCCCTACTAAAGCAGTTTCCAAGGAAGTAGAACGGATTGATCAATTTTTCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctatatttgtgctttctatttagctgtttgtgaacattttcactattatttgcagGCCCTACTAAAGCAGTTTCCAAGGAAGTAGAACGGATTGATCAATTTTTCTATACTTATGCCGATAACTCATCTGTCATGATTGA
                                   attttcactattattt  TA-rich tract