1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cactaagcactaaactagtgtagaaacaagtcaaggtagtaatatatatgtgatgcactcgtttcctaggtaagtcctaattgttgtttcttttgtccagGCAGTTTTCTGTTACTGGACCTCATCAAACATATTCACCCTGTTATATGGTCTTG
species | Zea mays |
transcript | GRMZM2G064804_T02 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTAGAGGAGTAGCTGTTTTGACAGTCCCATTTACAATGAACTTTGCCACG GCAGTTTTCTGTTACTGGACCTCATCAAACATATTCACCCTGTTATATGGTEST: gi|211019095|gb|FL016574.1|FL016574
genomic: CTAGAGGAGTAGCTGTTTTGACAGTCCCATTTACAATGAACTTTGCCACGgtatgacaat ... ttttgtccagGCAGTTTTCTGTTACTGGACCTCATCAAACATATTCACCCTGTTATATGGT
EST: CTAGAGGAGTAGCTGTTTTGACAGTCCCATTTACAATGAACTTTGCCACG GCAGTTTTCTGTTACTGGACCTCATCAAACATATTCACCCTGTTATATGGT
genomic: CTAGAGGAGTAGCTGTTTTGACAGTCCCATTTACAATGAACTTTGCCACGgtatgacaat ... ttttgtccagGCAGTTTTCTGTTACTGGACCTCATCAAACATATTCACCCTGTTATATGGT
atatgtgatgcactcgtttcctaggtaagtcctaattgttgtttcttttgtccagGCAGTTTTCTGTTACTGGACCTCATCAAACATATTCACCCTGTTATATGGTCTTG
tcctaat putative branch site (score: 38)
ttgtttcttttgtcc putative PPT
taattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cactaagcactaaactagtgtagaaacaagtcaaggtagtaatatatatgtgatgcactcgtttcctaggtaagtcctaattgttgtttcttttgtccagGCAGTTTTCTGTTACTGGACCTCATCAAACATATTCACCCTGTTATATGGTCTTG
- - - - - - - - - - - -aaacaag
- - - - - - - - - - - - - - - - - - - - - - - - -gtgatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgtt