1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CAAAGGAGGTGGAACATTGTGGTTTACTGACCTGACGACTCCAGATTCTCTTTACATCTTGCCTATGTTAACAGGACTGACCTTCTTGGCCACAGTGGAGgtgtgcactttgtctgtctcgattcagtttttttattacccttttggcattgtgcaattagtttgctctacctctatttcattcttggatgcttatttct...
species | Zea mays |
transcript | GRMZM2G064804_T02 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: TTTACATCTTGCCTATGTTAACAGGACTGACCTTCTTGGCCACAGTGGAG CTTAACTTGCAAGAAGGAATGGAGGGAAATCCTATGGCTGGTAAAATGAAGEST: gi|93012844|gb|EB638364.1|EB638364
genomic: TTTACATCTTGCCTATGTTAACAGGACTGACCTTCTTGGCCACAGTGGAGgtgtgcactt ... gttattgcagCTTAACTTGCAAGAAGGAATGGAGGGAAATCCTATGGCTGGTAAAATGAAG
EST: TACATCTTGCCCTATGT-AACAGGACTGACCTTTTCTGGC-ACAGTGGAG CTTAACTTGCAAGAAGGAATGGAGGGAAATCCTATGGCTGGTAAAATGAAGEST: gi|211019095|gb|FL016574.1|FL016574
genomic: TACATCTTGCC-TATGTTAACAGGACTGACCTTCT-TGGCCACAGTGGAGgtgtgcactt ... gttattgcagCTTAACTTGCAAGAAGGAATGGAGGGAAATCCTATGGCTGGTAAAATGAAG
EST: TTTACATCTTGCCTATGTTAACAGGACTGACCTTCTTGGCCACAGTGGAG CTTAACTTGCAAGAAGGAATGGAGGGAAATCCTATGGCTGGTAAAATGAAG
genomic: TTTACATCTTGCCTATGTTAACAGGACTGACCTTCTTGGCCACAGTGGAGgtgtgcactt ... gttattgcagCTTAACTTGCAAGAAGGAATGGAGGGAAATCCTATGGCTGGTAAAATGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAAAGGAGGTGGAACATTGTGGTTTACTGACCTGACGACTCCAGATTCTCTTTACATCTTGCCTATGTTAACAGGACTGACCTTCTTGGCCACAGTGGAGgtgtgcactttgtctgtctcgattcagtttttttattacccttttggcattgtgcaattagtttgctctacctctatttcattcttggatgcttatttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG