1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagatcttgttcttagcttatccatagtatacttatatataccaactgagtattgtcagtcaagtgcatcttgtggctatgctttaacctttcgagtttatatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGTTCAAAAA
species | Zea mays |
transcript | GRMZM2G064804_T02 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGEST: gi|71308226|gb|DR790346.1|DR790346
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
EST: GCAATAAATCCAGAGGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGEST: gi|149098929|gb|EE184941.2|EE184941
genomic: GCAATAAATCCAGAG-ATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGEST: gi|93012844|gb|EB638364.1|EB638364
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGEST: gi|91870159|gb|EB400732.1|EB400732
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGEST: gi|50332340|gb|CO527466.1|CO527466
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGEST: gi|93281620|gb|EB673884.1|EB673884
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAAEST: gi|101391714|gb|EB817793.1|EB817793
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAA
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGEST: gi|71767963|gb|DR965900.1|DR965900
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGEST: gi|78113575|gb|DV531966.1|DV531966
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
EST: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAAT AGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
genomic: GCAATAAATCCAGAGATGGAAGTCATTAAAGACCAGATGAATgtgagatctt ... tatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTG
tcagtcaagtgcatcttgtggctatgctttaacctttcgagtttatatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGTTCAAAAA
ctttaac putative branch site (score: 36)
agtttatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagatcttgttcttagcttatccatagtatacttatatataccaactgagtattgtcagtcaagtgcatcttgtggctatgctttaacctttcgagtttatatcctgtaaAGTATGGATCCAAAATCAGTGCAGGAGGGACAAGCTAAAATGAAAGCGCTGTTCAAAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT