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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTACAAGGTCAAAATGCCGGTATTGACAGCGGTGGCACGGATAATTGATAATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttattaaatttgaagtttcgttctgactaccaaatgaactggatcactttgtttcacaagcacatgcacagccatcgggtccttgctctgtttta...

Basic information

species Zea mays
transcript GRMZM2G063258_T05
intron # 7
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149023561|gb|EE154540.2|EE154540
EST:     ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAG                         GTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
genomic: ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttatt ... tctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
EST: gi|94479866|gb|EB708824.1|EB708824
EST:     ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAG                         GTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
genomic: ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttatt ... tctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
EST: gi|71770744|gb|DR968681.1|DR968681
EST:     ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAG                         GTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
genomic: ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttatt ... tctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
EST: gi|87155122|gb|DY399911.1|DY399911
EST:     ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAG                         GTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG
genomic: ATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttatt ... tctttgacagGTTGAGGAAGTCTGACGAGGCTAGCAACGGAGTTCTGCATTTTTCCACTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTACAAGGTCAAAATGCCGGTATTGACAGCGGTGGCACGGATAATTGATAATGAGTTAACTCCAACTAAGGCGGTTTTGGAGTTAATGAATCTTCCCCAGgtacgttattaaatttgaagtttcgttctgactaccaaatgaactggatcactttgtttcacaagcacatgcacagccatcgggtccttgctctgtttta

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