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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TCTACAATCATCCCACGAGCATTGGGAAATCGCCGCCAACCGTTTGTTGTTCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAGgtctgttgatatcattaatattgttaacctgctgtcacttttttttcaagcttaatgttgatgctgagttatttgtacctgtattcctttgaacttcttc...

Basic information

species Zea mays
transcript GRMZM2G063258_T05
intron # 4
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|91870595|gb|EB400977.1|EB400977
EST:     TCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAG                         CAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAAC
genomic: TCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAGgtctgttgat ... ttaattgtagCAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAAC
EST: gi|87154557|gb|DY399346.1|DY399346
EST:     TCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAG                         CAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAAC
genomic: TCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAGgtctgttgat ... ttaattgtagCAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAAC
EST: gi|71330652|gb|DR802102.1|DR802102
EST:     TCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAG                         CAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAAC
genomic: TCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAGgtctgttgat ... ttaattgtagCAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAAC
EST: gi|26455233|gb|CA826816.1|CA826816
EST:     TCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAG                         CAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAAC
genomic: TCTGTCAGGACCATCATTTGCTGTAGAGTTAATGAACAAATTGCCTACAGgtctgttgat ... ttaattgtagCAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAAC