1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAGgtaaaattgcctagctccatgagttcatcacagaagatacaacaagctacaactgcacgaatgcaaaaatgcatgccatgtaggctcgtatttactaaaa...
species | Zea mays |
transcript | GRMZM2G063258_T05 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: TCTGTTCAACAACTGTTAGCATCCCCCAATTTGAGGATAAGCACATCAAG TGATGTTACAGGAGTAGAAATCGCAAGTGCCCTEST: gi|87154557|gb|DY399346.1|DY399346
genomic: TCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAGgtaaaattgc ... gatacttcagTGATGTTACAGGAGTAGAAATCGCAGGTGCCCT
EST: TCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAG TGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAATEST: gi|94479866|gb|EB708824.1|EB708824
genomic: TCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAGgtaaaattgc ... gatacttcagTGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAAT
EST: GCATCCCCAAATTTGGGGATAAGCACATCAAG TGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAATEST: gi|21330849|gb|BQ486230.1|BQ486230
genomic: GCATCCCCAAATTTGAGGATAAGCACATCAAGgtaaaattgc ... gatacttcagTGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAAT
EST: AGGATAAGCACATCAAG TGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAATEST: gi|71330652|gb|DR802102.1|DR802102
genomic: AGGATAAGCACATCAAGgtaaaattgc ... gatacttcagTGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAAT
EST: TCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAG TGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAATEST: gi|26455233|gb|CA826816.1|CA826816
genomic: TCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAGgtaaaattgc ... gatacttcagTGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAAT
EST: TCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAG TGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAAT
genomic: TCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAGgtaaaattgc ... gatacttcagTGATGTTACAGGAGTAGAAATCGCAGGTGCCCTGAAGAACGTTCTTGCAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAATGGTGGTGGCATCCAAAGACAACAAGTTGGCAAGTTCTGTTCAACAACTGTTAGCATCCCCAAATTTGAGGATAAGCACATCAAGgtaaaattgcctagctccatgagttcatcacagaagatacaacaagctacaactgcacgaatgcaaaaatgcatgccatgtaggctcgtatttactaaaa
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