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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTCTATAGTCTATCTATGGAGGCGGGGGGCAGGGGTGCTGACAAGAAAAATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggtttatttaattctctttccttgaattcttctatctcagaaagaccagaactgattttttttttctccag

Basic information

species Zea mays
transcript GRMZM2G057412_T03
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057412_T03 (Zea mays), 5'ss of exon 8
lower sequence: LOC_Os03g33590.1 (Oryza sativa), 5'ss of exon 8
AGTCTATAGTCTATCTATGGAGGCGGGGGGCAGGGGTGCTGACAAGAAAAATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggtttatttaattctcttt---ccttgaattcttctatctcagaaagaccaga--actgattttttttttctccag
|||||||| ||| |||||||| |||||||| || |||||||||||||||||||| |||||||| |||||| | ||||||||||||||||||||||||||||| ||  ||||||  |||||  ||    | |||||  ||  ||  |        | ||  |   | ||   |||| | |||
AGTCTATAATCTCTCTATGGAAGCGGGGGGAAGAGGTGCTGACAAGAAAAATCTGAATGATCAAAGAGACTTATTCCAACGAATCTCAGATTTTATTAAGgtctaactttattgtattcttgttgtatcatgaatgttttaatagcttttttttctgatcatctaattaccttttttgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240130|gb|DT648044.1|DT648044
EST:     CGAATCTCAGATTTTATTAAG                         AATGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: CGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|93281097|gb|EB673361.1|EB673361
EST:     ATTTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|149102607|gb|EE287965.2|EE287965
EST:     ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|33467969|gb|CF245018.1|CF245018
EST:     TCTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: TCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|76909352|gb|DV163342.1|DV163342
EST:     ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|211386247|gb|FL227579.1|FL227579
EST:     ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|74242217|gb|DT650131.1|DT650131
EST:     ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|60347261|gb|DN214234.1|DN214234
EST:     TCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: TCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|89759386|gb|DY688239.1|DY688239
EST:     ATCTTAATGATCAGAGAGACCTGTTCCAACGAATTTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
EST: gi|60354297|gb|DN221270.1|DN221270
EST:     ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAG                         AGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT
genomic: ATCTTAATGATCAGAGAGACCTGTTCCAACGAATCTCAGATTTTATTAAGgtgtaggttt ... ttttctccagAGTGGTGAGTGCCCTGAAGAATCACTTAGGATTTCAGGCAAGAATGGCATT