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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatcataagcagaacttgatatttctgtggaatactgtattttggtataatagtgttaaagcttctctttgtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG

Basic information

species Zea mays
transcript GRMZM2G057412_T03
intron # 10
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057412_T04 (Zea mays), 3'ss of exon 10
lower sequence: LOC_Os03g33590.2 (Oryza sativa), 3'ss of exon 10
gttatcataagcagaacttgata-------tttctgtggaatact-gtattttgg---tataatagtgttaaagcttctctttgtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG
||||  ||  |   || |    |       ||  | |  | ||||  |||||  |   |||| |     |     |  |  || |     |||||||| |  ||||| |||||  |||||||||||||||| |||   ||||||||||||||| |||| ||||||
gttagtatcggtgaaattatgcatattaatttcttttctattacttatatttctgctttatattcagactggcattcataatttttatgacagGACAATGGATTGCTACATGATATCTTTGACATCAAAATGGATAAAACTGAAAACATGTCAACCACTGAAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|74240130|gb|DT648044.1|DT648044
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|93281097|gb|EB673361.1|EB673361
EST:     TGAACTATATGAGGCGGTTTTTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTTTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|149102607|gb|EE287965.2|EE287965
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|33467969|gb|CF245018.1|CF245018
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|76909352|gb|DV163342.1|DV163342
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|211386247|gb|FL227579.1|FL227579
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|74242217|gb|DT650131.1|DT650131
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|60347261|gb|DN214234.1|DN214234
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|89759386|gb|DY688239.1|DY688239
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|86466198|gb|DY232571.1|DY232571
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|211131389|gb|FL432622.1|FL432622
EST:     AACTATATGAGGCGGTTTTTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: AACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|60354297|gb|DN221270.1|DN221270
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|89249172|gb|DY620958.1|DY620958
EST:     TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAG                         GACAACGATATGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
genomic: TGAACTATATGAGGCGGTTTCTTGGGCGGGGATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA
EST: gi|211131390|gb|FL432623.1|FL432623
EST:     ATTCCTGAAGCATTCACAG                         GACAACGATTTGCTGCATGAGGTTTTTGACATCAAAATTGATCGTACTGAA
genomic: ATTCCTGAAGCATTCACAGgttatcataa ... gtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtggaatactgtattttggtataatagtgttaaagcttctctttgtctgtgcagGACAACGATTTGCTGCATGAGGTCTTTGACATCAAAATTGATCGTACTGAAAACATGTCAGCCACCGAAAAG
                                    cttctctttgtctgt  CT-rich tract
            tattttggtataata  TA-rich tract