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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTAGCAGTTGTCACATTTGTTGGTGCAACTGATCTTGCTGAAACTCAGCTGTCTCTGAAAGCCATCTGGGATGTGATCCATCCAAAATCAGGATCAAATgtaaggccgactgacctccatttttttggttgtatagcaataagcagaaagtatgacatccagtttattctaaactttattattttgggtgtgtttacag

Basic information

species Zea mays
transcript GRMZM2G057412_T03
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G057412_T02 (Zea mays), 5'ss of exon 6
lower sequence: LOC_Os03g33590.2 (Oryza sativa), 5'ss of exon 6
CTTAGCAGTTGTCACATTTGTTGGTGCAACTGATCTTGCTGAAACTCAGCTGTCTCTGAAAGCCATCTGGGATGTGATCCATCCAAAATCAGGATCAAATgtaaggccgactgacctccatttttttggttgtatagcaataagcagaaagtatgacatccagtttattctaaactttattattttgggtg--tgtttacag
|||||| |||||||||||||||||||||||||||||  ||||||| ||||| ||| |||||||||||||||||||||| || || || |||||||| |||||||||  || | ||     || |  || | |  | | |||||    ||| | | | |||   | |  ||| ||||| | | |||||  ||  | |||| ||
CTTAGCTGTTGTCACATTTGTTGGTGCAACTGATCTATCTGAAACCCAGCTATCTATGAAAGCCATCTGGGATGTGATTCACCCTAAGTCAGGATCCAATgtaagggtgaataac-----ttgtggtgatggcttggtaataattgcaaaatgttatatctgttgtcatctgaacttaaatcttttgcatggatttttatag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71420687|gb|DR805170.1|DR805170
EST:     TGTCTCTGAAAGCCATCTGGGATGTGATCCATCCAAAATCAGGATCAAAT                         GTCGGCGTAGTCAGAAA-CCGAAGCCTCCTTTGTTAGCAGCTGCCGTATCT
genomic: TGTCTCTGAAAGCCATCTGGGATGTGATCCATCCAAAATCAGGATCAAATgtaaggccga ... gtgtttacagGTCGGCGTAGTCAGAAAACCGAAGCCTCCTTTGTTAGCAGCTGCCGTATCT