1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...atatccgcctgatgttgatcagaatttaccaattggtgatttgaatgaccaaataacattactaaacactttgttactgtaacatacatggctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAGTTTTGTGCTTCTTGGTTTAGTGGAAAACAA
species | Zea mays |
transcript | GRMZM2G057412_T03 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAGEST: gi|89759048|gb|DY687994.1|DY687994
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAGEST: gi|50339208|gb|CO534334.1|CO534334
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAGEST: gi|71420687|gb|DR805170.1|DR805170
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAGEST: gi|211386246|gb|FL227578.1|FL227578
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAGEST: gi|76909353|gb|DV163343.1|DV163343
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
EST: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAG GGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
genomic: TCGCAGGAATTCGTTCTTGACAAGTACGTCGACGCTCTCTATGAGAAGAGgtgggtgcct ... gctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAG
tgaccaaataacattactaaacactttgttactgtaacatacatggctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAGTTTTGTGCTTCTTGGTTTAGTGGAAAACAA
aaataacattactaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atatccgcctgatgttgatcagaatttaccaattggtgatttgaatgaccaaataacattactaaacactttgttactgtaacatacatggctgatgcagGGGATCCACAAGAGAGGAAGCATTGGGCTCTCTTACCGATGCTTTTGAAAGTTTTGTGCTTCTTGGTTTAGTGGAAAACAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA