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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CATTTGATAAGTAAAAACTGCAACCATTTCTGTGAGGATATCTGCAAAAGGTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttcttgaaacatatgctttctcagccattaatattgctctccaagagttgctgcagagtttgaatatctaaataggcatctgttttttcctca...

Basic information

species Zea mays
transcript GRMZM2G049382_T01
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G049382_T01 (Zea mays), 5'ss of exon 4
lower sequence: GLYMA07G20500.1 (Glycine max), 5'ss of exon 3
CATTTGATAAGTAAAAACTGCAACCATTTCTGTGAGGATATCTGCAAAAGGTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgta---ggagttcttgaaa--catatgctttctcagccattaatattgctctccaagagttgctgcagagtttgaatatctaaataggcatctgttttttcctca
|| |||||    || || ||||||||||||||||||||||| ||  | | | | ||||| |||| ||||||||||||||| ||||| ||||| ||||| ||||   |   || || ||   || || | ||||       | | ||||     |   ||   | | | ||     | ||   | |||   | || || ||||| |
CACTTGATTGTGAAGAATTGCAACCATTTCTGTGAGGATATTTGTTACAAGCTAACAGGCAATTCTATTCCAAAATGGGTCAATCGTCTTGCAAGAATAGgtatatgacatttttaaactccagatccattcttttatgattaaattgtatcactttagagtcggtaaagc----agatggcattagatgt-tggttcttcctga

upper sequence: GRMZM2G049382_T01 (Zea mays), 5'ss of exon 4
lower sequence: Vv03s0063g02130.t01 (Vitis vinifera), 5'ss of exon 2
CATTTGATAAGTAAAAACTGCAACCATTTCTGTGAGGATATCTGCAAAAGGTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttcttgaaacatatgctttctcagccattaatattgctctccaagagttgctgcagagtttgaatatctaaataggcatctgt--tttttcctca----
|| ||||| | ||| ||||||||||||||||||||||||||||| || | | |||| || ||    |||||||||||||| |||||||| || ||||| ||||     | ||| |    |    | || | |    |  ||   |  |   ||  |      |||  | ||| | ||| | ||  |  ||  || ||   ||    
CACTTGATTATTAAGAACTGCAACCATTTCTGTGAGGATATCTGTAACAAGCTGACTGGGAACCGAATTCCAAAATGGGTCAATCGACTAGCAAGAATAGgta-----ttttgcacagcacctctactgatctcacaccatctattactttgacattaacttgagcctcaat-tataagttggttttggtgattgttaagcaaact
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78109677|gb|DV528093.1|DV528093
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|93014379|gb|EB639899.1|EB639899
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAG
EST: gi|71775361|gb|DR973239.1|DR973239
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|93016747|gb|EB642267.1|EB642267
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGNTTTGCA-CTGCATTCTA
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTG-TTTGCAACTGCATTCTA
EST: gi|71437491|gb|DR818541.1|DR818541
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|71444264|gb|DR825314.1|DR825314
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTTCA-GATCAACGCGGC
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCT-CAAGATCAACGCGGC
EST: gi|74241229|gb|DT649143.1|DT649143
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCC
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCC-
EST: gi|76015122|gb|DT942292.1|DT942292
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|76286586|gb|DV026154.1|DV026154
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCT-GAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|149081435|gb|EE170555.2|EE170555
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|101389927|gb|EB816894.1|EB816894
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCT-GAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|30088173|gb|CB886378.1|CB886378
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|37380498|gb|CF627065.1|CF627065
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|78109421|gb|DV527837.1|DV527837
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|101389925|gb|EB816893.1|EB816893
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCT-GAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|94476135|gb|EB705093.1|EB705093
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|76286587|gb|DV026155.1|DV026155
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCT-GAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
EST: gi|78109676|gb|DV528092.1|DV528092
EST:     GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGG                         GTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG
genomic: GTTGACAGGAAATTTTATTCCAAAATGGGTGAATCGACTTGCTAGAATGGgtaggagttc ... ttatgtgcagGTGCTGTTTGCAACTGCATTCTACCAGAGTCCCTCAAGATCAACGCGGCCG