1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
CCAGGGAATACACTGGTTTATCTAAATGTGTATGATTTGACACCAGTAAACGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcctacacttatgtctcgtatatggtatctctaagccagctcttcttaacttcaactttcttctaagtttccttggttcttttttatgttttc...
species | Zea mays |
transcript | GRMZM2G049382_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|74237928|gb|DT645842.1|DT645842
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|94476136|gb|EB705094.1|EB705094
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTAEST: gi|78109677|gb|DV528093.1|DV528093
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTA
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|93014379|gb|EB639899.1|EB639899
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|71775361|gb|DR973239.1|DR973239
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|93016747|gb|EB642267.1|EB642267
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|71437491|gb|DR818541.1|DR818541
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|71444264|gb|DR825314.1|DR825314
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|17970113|gb|BM276864.1|BM276864
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|32919043|gb|CF023855.1|CF023855
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|76015982|gb|DT943152.1|DT943152
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|74241229|gb|DT649143.1|DT649143
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|87298772|gb|DY470775.1|DY470775
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|76015122|gb|DT942292.1|DT942292
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|32943700|gb|CF048519.1|CF048519
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTTTTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACEST: gi|71437490|gb|DR818540.1|DR818540
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCAC
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTTATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATATA-TGGAEST: gi|149081435|gb|EE170555.2|EE170555
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGAT-TAGTGGA
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|101389927|gb|EB816894.1|EB816894
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|22489209|gb|BU049119.1|BU049119
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|32918957|gb|CF023769.1|CF023769
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|78109421|gb|DV527837.1|DV527837
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|149015537|gb|EE045415.2|EE045415
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|76286587|gb|DV026155.1|DV026155
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAGEST: gi|50330365|gb|CO525491.1|CO525491
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
EST: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAG TTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
genomic: CGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcc ... ttctttacagTTCATGGTGTTGAGTATGCATTTGGAGCACATGACTATTCGATTAGTGGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCAGGGAATACACTGGTTTATCTAAATGTGTATGATTTGACACCAGTAAACGGCTATGTTTACTGGGCTGGTCTAGGGGTATTTCATTCTGGCATTGAAGgtatgatgcctacacttatgtctcgtatatggtatctctaagccagctcttcttaacttcaactttcttctaagtttccttggttcttttttatgttttc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG