1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgtgttagctcctcccccccccccccttgtttgaatattatctgacgcataatggattttcttatcctacttccacttttccttgcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATCAGACCAGAAATCTTCTGCTAAATTTTGTTTGTTTTCAAAAGTCCAATC
species | Zea mays |
transcript | GRMZM2G049382_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCCAAGAAGGAAAGGAATCTCAGCATGCACTTTCCATEST: gi|74237928|gb|DT645842.1|DT645842
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|94476136|gb|EB705094.1|EB705094
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|211441856|gb|FL182593.1|FL182593
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|78109677|gb|DV528093.1|DV528093
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|93014379|gb|EB639899.1|EB639899
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|71775361|gb|DR973239.1|DR973239
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|93016747|gb|EB642267.1|EB642267
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|30306535|gb|CD001208.1|CD001208
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|71437491|gb|DR818541.1|DR818541
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|71444264|gb|DR825314.1|DR825314
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|17970113|gb|BM276864.1|BM276864
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|32919043|gb|CF023855.1|CF023855
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|76015982|gb|DT943152.1|DT943152
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|74241229|gb|DT649143.1|DT649143
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|211441853|gb|FL182590.1|FL182590
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|87298772|gb|DY470775.1|DY470775
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|76015122|gb|DT942292.1|DT942292
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|32943700|gb|CF048519.1|CF048519
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|211441855|gb|FL182592.1|FL182592
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|71437490|gb|DR818540.1|DR818540
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|149081435|gb|EE170555.2|EE170555
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|101389927|gb|EB816894.1|EB816894
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|22489209|gb|BU049119.1|BU049119
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|32918957|gb|CF023769.1|CF023769
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG CCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|78109421|gb|DV527837.1|DV527837
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|149015537|gb|EE045415.2|EE045415
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|211441852|gb|FL182589.1|FL182589
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|211441854|gb|FL182591.1|FL182591
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|76286587|gb|DV026155.1|DV026155
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATEST: gi|50330365|gb|CO525491.1|CO525491
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
EST: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAG TCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
genomic: AAATCACTATGGTTACCCTTTCCTACAGCTGGGCAAGCGTAGAATGTCAGgtgtgttagc ... gcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAAT
atctgacgcataatggattttcttatcctacttccacttttccttgcatttatagTCATAATGTTGGGCTCAAAGAAGGAAAGGAATCTCAGCATGCACTTTCAATCAGACCAGAAATCTTCTGCTAAATTTTGTTTGTTTTCAAAAGTCCAATC
atctgac putative branch site (score: 3)
ttttcttatcctactt putative PPT
attttcttat TA-rich tract