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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATCTCCCCGGCTGGCTCGGTTCCCGAACCTCCCCGACATGTCTCCAAAGAAGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaatagctgtcaattttttttgcagtgttgtggtttcaggtttcacctgactgagctattttttttgggcaatccttcatcaaatgcctgtgacaaactttataactgaactctccag

Basic information

species Zea mays
transcript GRMZM2G033828_T02
intron # 17
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033828_T02 (Zea mays), 5'ss of exon 17
lower sequence: LOC_Os08g42600.2 (Oryza sativa), 5'ss of exon 16
ATCTCCCCGGCTGGCTCGGTTCCCGAACCTCCCCGACATGTCTCCAAAGAAGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagt---aaaatagctgtcaattttttttgcagtgttgtg-gtttcaggtttcac--ctgactgagctattttttttg-ggcaatccttcatcaaatgcctgtgacaaactttataactgaactctccag
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ATCTCCTCGGCTATCTCGGTTTCCAAACCTTCCTGACATGTCTCCCAAGAAAGTTTCTGCTGCTCATAACGTATATGTTTCACCCTTGCGCACATCAAAGgtacgcctcaagaaataaactgatctcccttgtgaagtttaatgttgcatttataatgaccacctgaattttaactataatggtagtccttgatcaa-tgt-tgtgacat-tgcaataactgaatgtttcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30086964|gb|CB885172.1|CB885172
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|76933781|gb|DV173583.1|DV173583
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|30031712|gb|CB833563.1|CB833563
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|30087032|gb|CB885240.1|CB885240
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|30032038|gb|CB833889.1|CB833889
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|30088299|gb|CB886504.1|CB886504
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|29544714|gb|CB605094.1|CB605094
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|76933783|gb|DV173584.1|DV173584
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGG
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGG
EST: gi|27575967|gb|CA998661.1|CA998661
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|30088298|gb|CB886503.1|CB886503
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
EST: gi|30031776|gb|CB833627.1|CB833627
EST:     AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAG                         ATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC
genomic: AGGTTTCTGCTACCCATAACGTGTACGTCTCACCGCTACGGTCATCGAAGgtaagtaaaa ... aactctccagATGGACACTCTTCTGTCCCCGAGCTCCAAGAGCTACTACGCGTGCGTCGGC