Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatatccttacatataaatctgtcggagttccaatttttaaccgatacaaatatttcctactatgttcattaaataccttgttgacaaaaccccgcagATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAACAACCTCAGTGCAAGCCACAAGTTTTCCGAAGCGTCTATGTTCATTGGC

Basic information

species Zea mays
transcript GRMZM2G033828_T02
intron # 14
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033828_T02 (Zea mays), 3'ss of exon 14
lower sequence: LOC_Os08g42600.2 (Oryza sativa), 3'ss of exon 13
-----------------------------------gtatatccttacatataaat-ctgtcggagttccaatttttaaccgatacaaatatttcctactatgttcattaaataccttgttgacaaaaccccgcagATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAACAACCTCAGTGCAAGCCACAAGTTTTCCGAAGCGTCTATGTTCATTGGC
                                     || ||  |   ||| | | ||     |  |   | ||        | || |||| ||         ||| |   |   || |||    |     |||||| |||||| ||| |||  |||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||| || || |||||||||||| 
gtctgtctagaaattactccccttgcaacaaagaaagatttcgcttgttatgattgctagtatatctatcaattgctgtttttccagatatctcagttagcactcagtt--ttgtttattggtccatgtgtgcagATATCTCAATTGGCACTGACATTCAAGGAAATTATTTTCGGCTACAGAAAACAATCTCAGTGCAAGCCACAAGTTTTCCGTAGTGTTTATGTTCATTGGG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30087053|gb|CB885261.1|CB885261
EST:     ACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAG                         ATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAA
genomic: ACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAGgtatatcctt ... aaccccgcagATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAA
EST: gi|67026333|gb|CO455082.1|CO455082
EST:     ACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAG                         ATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAA
genomic: ACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAGgtatatcctt ... aaccccgcagATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAA
EST: gi|89756605|gb|DY686579.1|DY686579
EST:     ACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAG                         ATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAA
genomic: ACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAGgtatatcctt ... aaccccgcagATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAA
EST: gi|76933783|gb|DV173584.1|DV173584
EST:     ACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAG                         ATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAA
genomic: ACAGGCACATTGACCAGATCATACTATGCAGCATATATGGAGTTGCCAAGgtatatcctt ... aaccccgcagATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gatacaaatatttcctactatgttcattaaataccttgttgacaaaaccccgcagATCTCTCAACTGGAACTTTCATTCAAGGAGATTATTTTCGGCTACAGGAAACAACCTCAGTGCAAGCCACAAGTTTTCCGAAGCGTCTATGTTCATTGGC
                                    tgttgac  putative branch site (score: 3)
                  tatgttcattaaata  TA-rich tract