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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTGAACCAATGCCATCGCTTGATGCAATTGCAGCACATCATAACATCTCATTGGGTGGCCTGCCACCTCTTCCCTTCCAGAAACAGGAGCGTTTGCAAGgtataattttatcaaccaccatcagcatgatgcctatttcatattcctgaagtgttaaagtggtatttctttgggttttccacttttcaatcattcaaacaagtgcttgaacatcctctttgttaattgcgtttcctgtag

Basic information

species Zea mays
transcript GRMZM2G033828_T02
intron # 11
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G033828_T01 (Zea mays), 5'ss of exon 11
lower sequence: LOC_Os08g42600.1 (Oryza sativa), 5'ss of exon 10
GCTGAACCAATGCCATCGCTTGATGCAATTGCAGCACATCATAACATCTCATTGGGTGGCCTGCCACCTCTTCCCTTCCAGAAACAGGAGCGTTTGCAAGgtataattttatcaaccaccatcagcatgatgcctatttcatattcctgaagtgt-taaagtggtatttctttgggttttccacttttcaatcattcaaacaagtgcttgaacatcctctttgttaattgcgtttcctgtag
||||||||||||||||| |||||||| ||||| || || |||||||| ||| | |  || ||||||||||||||||| || || || || | ||  | |||||      |  ||    | | |  |||| | | |      |     | || | | | ||    |  ||     |   || ||  |||   |  |||    |                                        
GCTGAACCAATGCCATCACTTGATGCCATTGCGGCGCACCATAACATTTCACTCGAGGGGCTGCCACCTCTTCCCTTTCAAAAGCAAGAACATTCACCAGgtagcccactggca--tgctacct-catgtttcattgcctttgactttaaaatatatgaaagaatggtt-----gaacttacaaattttggtatttcttgtag---------------------------------------

upper sequence: GRMZM2G033828_T01 (Zea mays), 5'ss of exon 11
lower sequence: AT3G12280.2 (Arabidopsis thaliana), 5'ss of exon 10
GCTGAACCAATGCCATCGCTTGATGCAATTGCAGCACATCATAACATCTCATTGGGTGGCCTGCCACCTCTTCCCT-TCCAGAAACAGGAGCGTTTGCAAGgtataattttatcaaccaccatcagcatgatgcctatttcatattcctgaagtgttaaagtggtatttctttgggttttccacttttcaatcattcaaacaagtgcttgaacatcctctttgttaattgcgtttcctgtag
||||||||||||||||| || |||||||| ||||||| |  |||  |||| |   |  ||    ||    |   || | || || || ||   ||  | |||||   ||||||      |    |  |       | |   |  |      | || ||   |  | || |      || || | ||| |   |||  |                                            
GCTGAACCAATGCCATCTCTGGATGCAATCGCAGCACTTATTAATTTCTC-TGACGGAGCAAATCATGCATCATCTGTACAAAAGCATGAAACTTGTCCAGgta--gttttatttgtttctga-attaaagcagttttccaacctgttgttaatggtatgattttcttaccaaaaattgtcaaatttgctgccatatag-------------------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30087053|gb|CB885261.1|CB885261
EST:     GGGTGGCCTGCCACCTCTTCCCCTT-TAGAAACAGGAGCGTTTGCAAG                         ACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
genomic: GGGTGGCCTGCCACCTCTT-CCCTTCCAGAAACAGGAGCGTTTGCAAGgtataatttt ... tttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
EST: gi|67026333|gb|CO455082.1|CO455082
EST:     ATTGGGTGGCCTGCCACCTCTTCCTTTCCAGAAACAGGAGCGTTTGCAAG                         ACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
genomic: ATTGGGTGGCCTGCCACCTCTTCCCTTCCAGAAACAGGAGCGTTTGCAAGgtataatttt ... tttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
EST: gi|29167908|gb|CB411168.1|CB411168
EST:     ATTGGGTGGCCTGCCACCTCTTCCCTTCCAGAAACAGGAGCGTTTGCAAG                         ACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG
genomic: ATTGGGTGGCCTGCCACCTCTTCCCTTCCAGAAACAGGAGCGTTTGCAAGgtataatttt ... tttcctgtagACAAAGATGAAGTCAGGTCTCCCAAAAGGGCATGCACTGAGAGGAGAAACG