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gtcaattttcctttccgactctgtgaactcttgtctcatctggatgctcaagtggagttttccgttttgtcattcttattgcagTCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGGAATAGGCGTGTTCTTTAGCAAG
species | Zea mays |
transcript | GRMZM2G033828_T02 |
intron # | 12 |
splice site | 3' |
intron type | U2 |
EST: AAGGATATTATTAAACCAAAGTTACCACCTCTCCAATCAGCTTTTGCAAG TCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGGEST: gi|67026333|gb|CO455082.1|CO455082
genomic: AAGGATATTATTAAACCAAAGTTACCACCTCTCCAATCAGCTTTTGCAAGgtcaattttc ... cttattgcagTCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGG
EST: AAGGATATTATTAAACCAAAGTTACCACCTCTCCAATCAGCTTTTGCAAG TCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGGEST: gi|29167908|gb|CB411168.1|CB411168
genomic: AAGGATATTATTAAACCAAAGTTACCACCTCTCCAATCAGCTTTTGCAAGgtcaattttc ... cttattgcagTCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGG
EST: AAGGATATTATTAAACCAAAGTTACCACCTCTCCAATCAGCTTTTGCAAG TCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGGEST: gi|76933783|gb|DV173584.1|DV173584
genomic: AAGGATATTATTAAACCAAAGTTACCACCTCTCCAATCAGCTTTTGCAAGgtcaattttc ... cttattgcagTCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGG
EST: AAGGATATTATTAAACCAAAGTTACCACCTCTCCAATCAGCTTTTGCAAG TCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGG
genomic: AAGGATATTATTAAACCAAAGTTACCACCTCTCCAATCAGCTTTTGCAAGgtcaattttc ... cttattgcagTCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGG
cttgtctcatctggatgctcaagtggagttttccgttttgtcattcttattgcagTCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGGAATAGGCGTGTTCTTTAGCAAG
tcattctt CT-rich tract
attcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcaattttcctttccgactctgtgaactcttgtctcatctggatgctcaagtggagttttccgttttgtcattcttattgcagTCCAACAAGGCCGAATCCTGCAGCGGGAGGCGAAACGTGTGCAGAGACAGGAATAGGCGTGTTCTTTAGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG