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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAACAATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACGgtactggatcacatacaacggtataatttcacactgcatacaaccaactgctttctgatagctttttttatatcag

Basic information

species Zea mays
transcript GRMZM2G032944_T01
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211229014|gb|FL455773.1|FL455773
EST:     ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACG                         GTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
genomic: ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACGgtactggatc ... tttatatcagGTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
EST: gi|24763644|gb|CA398816.1|CA398816
EST:     CTTCTTTTTAGGGATTACG                         GTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
genomic: CTTCTTTTTAGGGATTACGgtactggatc ... tttatatcagGTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
EST: gi|76914811|gb|DV165697.1|DV165697
EST:     ACCAGGCGGCCTTCTTCTTTTTAGGGATTACG                         GTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
genomic: ACCAGGCGGCCTTCTTCTTTTTAGGGATTACGgtactggatc ... tttatatcagGTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
EST: gi|149085004|gb|EE174514.2|EE174514
EST:     ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACG                         GTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
genomic: ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACGgtactggatc ... tttatatcagGTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
EST: gi|74246084|gb|DT653998.1|DT653998
EST:     ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACG                         GTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
genomic: ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACGgtactggatc ... tttatatcagGTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
EST: gi|78124011|gb|DV542395.1|DV542395
EST:     ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACG                         GTCTTTATGACATGACAATGCTTCGGTTTTTACTTCATCAAAGAGTAGGGT
genomic: ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACGgtactggatc ... tttatatcagGTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
EST: gi|71759527|gb|DR957464.1|DR957464
EST:     ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACG                         GTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT
genomic: ATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATTACGgtactggatc ... tttatatcagGTCTTTATGACATGACAATGCTTCGGTTTTTACCTCATCAAAGAGTAGGGT