1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CACCCCTTTTTAATGGATGTTTCTAAAGAAACTTTCCCAGATTGGTTATTTTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcattttgtttcaaatattccttcatttgagttttattttcacataccaagttctgatgtccttacatttttgctttcag
species | Zea mays |
transcript | GRMZM2G032944_T01 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGAEST: gi|76914812|gb|DV165698.1|DV165698
genomic: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGA
EST: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGAEST: gi|149085005|gb|EE174515.2|EE174515
genomic: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGA
EST: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGAEST: gi|78124011|gb|DV542395.1|DV542395
genomic: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGA
EST: GCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGAEST: gi|71448268|gb|DR829318.1|DR829318
genomic: GCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGA
EST: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGAEST: gi|89761751|gb|DY689640.1|DY689640
genomic: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGA
EST: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCCAGTCACCATGGGATTAGAGAAGAGCACCCAGTCTTCCTTGGEST: gi|93284224|gb|EB676488.1|EB676488
genomic: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGG
EST: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGAEST: gi|71765663|gb|DR963600.1|DR963600
genomic: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGA
EST: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGAEST: gi|71438631|gb|DR819681.1|DR819681
genomic: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGA
EST: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTG ATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTTCTTGGAGAGA
genomic: TTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcatt ... ttgctttcagATCCAAGTCACCATGGAATTAGAGAAGAGCACCCAGTCTTCCTTGGAGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CACCCCTTTTTAATGGATGTTTCTAAAGAAACTTTCCCAGATTGGTTATTTTGCAAAGCCTGTCAAACTTCGCTGGGAAAAGCTGCTGCATCTTTACTTGgtcattcattttgtttcaaatattccttcatttgagttttattttcacataccaagttctgatgtccttacatttttgctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC