1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...ctcaatatattacactatatgtcattataataatcttctatataaattatattaccaggatcttcctaatgatgacaatcattgtgtatggtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTTGAGAAGGCATATGAAATTATATCCAATACAAAAGGGATTAATATCAAG
species | Zea mays |
transcript | GRMZM2G032944_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTEST: gi|31355055|gb|CD439412.1|CD439412
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|76914812|gb|DV165698.1|DV165698
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|149085005|gb|EE174515.2|EE174515
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|91047980|gb|EB158398.1|EB158398
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|76014696|gb|DT941866.1|DT941866
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|71448268|gb|DR829318.1|DR829318
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|89761751|gb|DY689640.1|DY689640
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|78124012|gb|DV542396.1|DV542396
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|93284543|gb|EB676807.1|EB676807
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|93284224|gb|EB676488.1|EB676488
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|71765663|gb|DR963600.1|DR963600
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|78116629|gb|DV535016.1|DV535016
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTEST: gi|71438631|gb|DR819681.1|DR819681
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
EST: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACG GTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
genomic: GTTTTAGAAGTGGGGTGTGGGAATGGAAGCACTGCTGTTTCCATTCTACGgtaatgccct ... gtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCT
attatattaccaggatcttcctaatgatgacaatcattgtgtatggtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTTGAGAAGGCATATGAAATTATATCCAATACAAAAGGGATTAATATCAAG
tcctaat putative branch site (score: 2)
tttcttc putative PPT
taatgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctcaatatattacactatatgtcattataataatcttctatataaattatattaccaggatcttcctaatgatgacaatcattgtgtatggtttcttcagGTCTAGTGAAAGGATCACTGTCTTTGCTTGTGACTGTAGTAAAGACACTCTTGAGAAGGCATATGAAATTATATCCAATACAAAAGGGATTAATATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgatga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gtgtatg