1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tgaatgtactttggagaacagcacttccacattctcagtataggtactcgtcttttaccagttaatagatgttatagttttttatttttatcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAACAATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATT
species | Zea mays |
transcript | GRMZM2G032944_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAAEST: gi|31355055|gb|CD439412.1|CD439412
genomic: TGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAA
EST: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATEST: gi|76914812|gb|DV165698.1|DV165698
genomic: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCAT
EST: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAAEST: gi|149085005|gb|EE174515.2|EE174515
genomic: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAA
EST: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAAEST: gi|149085004|gb|EE174514.2|EE174514
genomic: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAA
EST: AATGTTGTGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAAEST: gi|74246084|gb|DT653998.1|DT653998
genomic: AATGTTGTGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAA
EST: TTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAAEST: gi|78124011|gb|DV542395.1|DV542395
genomic: TTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAA
EST: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAAEST: gi|71448268|gb|DR829318.1|DR829318
genomic: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAA
EST: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAAEST: gi|71765663|gb|DR963600.1|DR963600
genomic: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAA
EST: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCTTCGANCATA-TGCCAACTACCEST: gi|71438631|gb|DR819681.1|DR819681
genomic: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGA-CATAATGCCAACTACC
EST: TTCTTGGAGAGAAACAATGTTGTGCTGGTGGCATGGATTTTATTACCATG ATATTCACACTGTCAGCCATACCCCTCGACATAATGCCAACTACC
genomic: TCCTTGGAGAGAACCAATGTTGTGCTGGTGGCATGGATTTTATTACCATGgtagattaat ... tcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACC
actcgtcttttaccagttaatagatgttatagttttttatttttatcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAACAATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATT
agttaat putative branch site (score: 4)
ttttttatttttatc putative PPT
agttaatagatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgaatgtactttggagaacagcacttccacattctcagtataggtactcgtcttttaccagttaatagatgttatagttttttatttttatcattggcagATATTCACACTGTCAGCCATACCCTTCGACATAATGCCAACTACCATAGAACAATGTGTTTCTGTTCTGAAACCAGGCGGCCTTCTTCTTTTTAGGGATT
tgaatgt
- - - - - - - - -acagcac
- - - - - - - - - - - - - -cacattc