Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTACCTGGGTGGGCTGCTCTCGTCGGGGCTCTCCATCCTGCTCTGGCTGCAGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcctgcctctatcctcttttaatttataatccgatggagcaacagtgtatccattgcttgtccgtctgtgagatgcatgcacacagcagccttggcttgaacacttgcttgctttctcctcctgcag

Basic information

species Zea mays
transcript GRMZM2G029087_T03
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029087_T02 (Zea mays), 5'ss of exon 3
lower sequence: LOC_Os02g03280.2 (Oryza sativa), 5'ss of exon 4
CTACCTGGGTGGGCTGCTCTCGTCGGGGCTCTCCATCCTGCTCTGGCTGCAGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcctgcctctatcctctt-ttaatttataatccgatggagca-acagtgtatccattgcttgtccgtctgtgagatgcatgcacacagcagccttggcttgaacacttgcttgctttctcctcctgcag
|||||| |||||  ||||||| || || |||||||||||||||||||||||| | ||||  |||||||| ||||||||| |   |||||||||||| ||||||     |||   ||||  |||| |  | |  |||    ||  | || ||   | |||| |||| ||  |  |||  | |||  ||    |  | ||                                     
CTACCTTGGTGGTTTGCTCTCTTCTGGCCTCTCCATCCTGCTCTGGCTGCAGTTTGCCGCATCCATCTTTGGCCACTCCACCGGCAGCTTCATGTTTGAGgtgagatactggggctatattcttgtccaatcctaac---atacaacatactacgcatcctttgcctgaaca-ctgatacatgtgtggtttctcctgcag-----------------------------------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|50323899|gb|CO519025.1|CO519025
EST:     TCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: TCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|148964263|gb|EE015455.2|EE015455
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|76288416|gb|DV027984.1|DV027984
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|148965311|gb|EE016118.2|EE016118
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTTCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|148997294|gb|EE035788.2|EE035788
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|51593042|gb|CV072188.1|CV072188
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|149103195|gb|EE288568.2|EE288568
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|76288415|gb|DV027983.1|DV027983
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|76013719|gb|DT940889.1|DT940889
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|47961573|gb|CN844282.1|CN844282
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGACTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|74244275|gb|DT652189.1|DT652189
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|18178570|gb|BM379780.1|BM379780
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|91877668|gb|EB407625.1|EB407625
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACCTCGGGCTGCTCATCTTC
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTC
EST: gi|149008169|gb|EE040357.2|EE040357
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|76013720|gb|DT940890.1|DT940890
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|148954442|gb|EC899865.2|EC899865
EST:     AGCTAGCCGGCTCCTTCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|149048849|gb|EE048352.2|EE048352
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|148954443|gb|EC899866.2|EC899866
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|78105316|gb|DV523734.1|DV523734
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|149108187|gb|EE292532.2|EE292532
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|74232622|gb|DT640536.1|DT640536
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|71432248|gb|DR813298.1|DR813298
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|149110918|gb|EE294416.2|EE294416
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|76011040|gb|DT938210.1|DT938210
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|149008168|gb|EE040356.2|EE040356
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|78110664|gb|DV529067.1|DV529067
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|78110665|gb|DV529068.1|DV529068
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTTCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|149110917|gb|EE294415.2|EE294415
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTGGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|51592969|gb|CV072115.1|CV072115
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|149031748|gb|EE286370.2|EE286370
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|67041238|gb|CO467493.1|CO467493
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|71432249|gb|DR813299.1|DR813299
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|50323900|gb|CO519026.1|CO519026
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|111190431|gb|EE288567.1|EE288567
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTGGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
EST: gi|149046683|gb|EE048073.2|EE048073
EST:     AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAG                         GTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG
genomic: AGCTAGCCGGCTCCATCTTCGGCCACTCCGCAACCAGCTTCATGTTCGAGgtgcctgcct ... cctcctgcagGTCTACTTCGGGCTGCTCATCTTCCTGGGCTACGTGGTGTACGACACGCAG