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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtcagtccgtccgcccgtgatccgtcgtgtcgtccgttcgtctctccttcgtcagttgacacaaccgaaattgtccattgcgccttcgtctctcacactgtgttgccctgtttgtgcgcgtgcgtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG

Basic information

species Zea mays
transcript GRMZM2G029087_T03
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282960|gb|DV022528.1|DV022528
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|148964263|gb|EE015455.2|EE015455
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211089859|gb|FL268126.1|FL268126
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211097262|gb|FL268158.1|FL268158
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCC-TCCTGGAAG-CGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|76288416|gb|DV027984.1|DV027984
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149108188|gb|EE292533.2|EE292533
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|148965311|gb|EE016118.2|EE016118
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|148997294|gb|EE035788.2|EE035788
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094789|gb|FL268144.1|FL268144
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAAGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211089857|gb|FL268124.1|FL268124
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGG
EST: gi|211094787|gb|FL268142.1|FL268142
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGANGTATGGGCTGCTGATGGCGGCTGCC-TCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211089856|gb|FL268123.1|FL268123
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|8367634|gb|BE050579.1|BE050579
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGC
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGC
EST: gi|211092318|gb|FL268133.1|FL268133
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149103195|gb|EE288568.2|EE288568
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211089853|gb|FL268120.1|FL268120
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211089855|gb|FL268122.1|FL268122
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211097264|gb|FL268160.1|FL268160
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094793|gb|FL268148.1|FL268148
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092323|gb|FL268138.1|FL268138
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211097265|gb|FL268161.1|FL268161
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|76013719|gb|DT940889.1|DT940889
EST:     TTGCGTCGGCAGCATCGCCTGGCTCTTTCTCGGTGCCCGTCTCCGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: TTGCGTCGGCAGCATCGCCTGGCTC-TTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092321|gb|FL268136.1|FL268136
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092315|gb|FL268130.1|FL268130
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211097261|gb|FL268157.1|FL268157
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAA
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAA
EST: gi|211097267|gb|FL268163.1|FL268163
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGAAG                         AGGAAGAAGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092317|gb|FL268132.1|FL268132
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCC-TCCTGGAAG-CGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|74244275|gb|DT652189.1|DT652189
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|148977344|gb|EE026031.2|EE026031
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092325|gb|FL268140.1|FL268140
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|91877668|gb|EB407625.1|EB407625
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149008169|gb|EE040357.2|EE040357
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|76013720|gb|DT940890.1|DT940890
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|19351217|gb|BM895749.1|BM895749
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211089852|gb|FL268119.1|FL268119
EST:     GTTGCGTCGGCMGCATCGCCTGGCTCTTCTCGGTGCC-GTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCC-TCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094791|gb|FL268146.1|FL268146
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092312|gb|FL268127.1|FL268127
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211089854|gb|FL268121.1|FL268121
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149048849|gb|EE048352.2|EE048352
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|101392580|gb|EB818220.1|EB818220
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|148954443|gb|EC899866.2|EC899866
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|19351129|gb|BM895661.1|BM895661
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094799|gb|FL268154.1|FL268154
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCC-TCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094794|gb|FL268149.1|FL268149
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|78105316|gb|DV523734.1|DV523734
EST:     CTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: CTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211097263|gb|FL268159.1|FL268159
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|22491497|gb|BU051420.1|BU051420
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092320|gb|FL268135.1|FL268135
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|22491303|gb|BU051226.1|BU051226
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|19436220|gb|BM952630.1|BM952630
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094792|gb|FL268147.1|FL268147
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|74232622|gb|DT640536.1|DT640536
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|71432248|gb|DR813298.1|DR813298
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094795|gb|FL268150.1|FL268150
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCC-TCCTGGAAG-CGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149110918|gb|EE294416.2|EE294416
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|87152697|gb|DY397486.1|DY397486
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|37417079|gb|CF646193.1|CF646193
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGACGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCT
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCT
EST: gi|211094796|gb|FL268151.1|FL268151
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094801|gb|FL268156.1|FL268156
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092319|gb|FL268134.1|FL268134
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092313|gb|FL268128.1|FL268128
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGANGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAAGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|78110665|gb|DV529068.1|DV529068
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149110917|gb|EE294415.2|EE294415
EST:     CTGGCTCTTCTCGGTGCCCGTCTAGGAGGAG                         AGGAAGAGGTATGGGCTGTTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: CTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094800|gb|FL268155.1|FL268155
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149031748|gb|EE286370.2|EE286370
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149086321|gb|EE175862.2|EE175862
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211094798|gb|FL268153.1|FL268153
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGA
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGA
EST: gi|67041238|gb|CO467493.1|CO467493
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|71432249|gb|DR813299.1|DR813299
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092322|gb|FL268137.1|FL268137
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|50328017|gb|CO523143.1|CO523143
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|50323900|gb|CO519026.1|CO519026
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|37418677|gb|CF647010.1|CF647010
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACAAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|149046683|gb|EE048073.2|EE048073
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         AGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
EST: gi|211092324|gb|FL268139.1|FL268139
EST:     GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAG                         WGGATGAGGTNTGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG
genomic: GTTGCGTCGGCAGCATCGCCTGGCTCTTCTCGGTGCCCGTCTACGAGGAGgtcagtccgt ... gtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcgccttcgtctctcacactgtgttgccctgtttgtgcgcgtgcgtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG
           ctctcac  putative branch site (score: 3)
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtcagtccgtccgcccgtgatccgtcgtgtcgtccgttcgtctctccttcgtcagttgacacaaccgaaattgtccattgcgccttcgtctctcacactgtgttgccctgtttgtgcgcgtgcgtgtgtgcagAGGAAGAGGTATGGGCTGCTGATGGCGGCTGCCCTCCTGGAAGGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT