Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaccttgcacttgtcgtcttgtctctcggaaattgcctgcgctgtgcgctgcttgattaagataataataatacagtaataatcaggattcgaacgctaccaggctggcaatgcgtcaccagcccgccataagttgtagtagtagacaaatgcttagatgacgaatggctgttttttttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCACCGGCGCGGCCATGGTGGCCAGGCGCAGGGAGTACCTCTACCTGGGTGGG

Basic information

species Zea mays
transcript GRMZM2G029087_T03
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G029087_T03 (Zea mays), 3'ss of exon 3
lower sequence: LOC_Os02g03280.2 (Oryza sativa), 3'ss of exon 3
gtaaccttgcacttgtcgtcttgtctctcggaaattgcctgcgctgtgcgctgcttgattaagataataataatacagtaataatcaggattcgaacgctaccaggctggcaatgcgtcaccagcccgccataagttgtagtagtagacaaatgcttagatgacgaatggctgttttttttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCACCGGCGCGGCCATGGTGGCCAGGCGCAGGGAGTACCTCTACCTGGGTGGG
                                                                                 |||      |  || |  | |     | |   | | | ||  ||  |  ||   || ||   || |||  ||| ||| ||| | | ||     || | |     |||||| || || || || || || || |||||||| || || | |||||||||  |||| ||||| || |||| ||| ||||||||||||||||| ||||| 
--------------------------------------------------------------------------------ctaactgtcctaggagcttttctcttgttgatctccttaactggcatg--attttttttacctgttgactgatg-ttatatgtctattg-----ttgtgtgttaccagCATTCTCGTAACAGCATTTGTTGGAACTGCCATTGCATTTGGGTGCTTCACTTGCGCTGCCATCGTTGCCAAGCGTAGGGAGTACCTCTACCTTGGTGGT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76282960|gb|DV022528.1|DV022528
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|148964263|gb|EE015455.2|EE015455
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211089859|gb|FL268126.1|FL268126
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACT
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACT
EST: gi|211097262|gb|FL268158.1|FL268158
EST:     G-CGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCG
EST: gi|76288416|gb|DV027984.1|DV027984
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|149108188|gb|EE292533.2|EE292533
EST:     GCGCTTCGGTCGGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCCAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCC
genomic: GCGCTTCGGTCGG-ACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCC
EST: gi|148965311|gb|EE016118.2|EE016118
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|148997294|gb|EE035788.2|EE035788
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211094789|gb|FL268144.1|FL268144
EST:     AGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCACGTGCTTCTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211089856|gb|FL268123.1|FL268123
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211092318|gb|FL268133.1|FL268133
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGG
EST: gi|149103195|gb|EE288568.2|EE288568
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211089853|gb|FL268120.1|FL268120
EST:     GGCGCTTCGGTCGGACCC-TCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGAC
EST: gi|211089855|gb|FL268122.1|FL268122
EST:     GGCGCTTCGGTCGGACCC-TCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGAC
EST: gi|211097264|gb|FL268160.1|FL268160
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGAACTGCCATCGCGTTCGCGTGCTTCTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211094793|gb|FL268148.1|FL268148
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211097265|gb|FL268161.1|FL268161
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|76013719|gb|DT940889.1|DT940889
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211092315|gb|FL268130.1|FL268130
EST:     GCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGCAATTTGACCCAAG                         CATCCTGGTGACGGCG
genomic: GCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGG-AATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCG
EST: gi|211097267|gb|FL268163.1|FL268163
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGACATGGAATTTGACCCAAG                         CATCCTGGTGACTGCGTTCGTGGGGACTGCCATCGCGTTCG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCG
EST: gi|211092317|gb|FL268132.1|FL268132
EST:     G-CGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTKACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTG
EST: gi|74244275|gb|DT652189.1|DT652189
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCCGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|148977344|gb|EE026031.2|EE026031
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTTAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|91877668|gb|EB407625.1|EB407625
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|149008169|gb|EE040357.2|EE040357
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|76013720|gb|DT940890.1|DT940890
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|19351217|gb|BM895749.1|BM895749
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|148954442|gb|EC899865.2|EC899865
EST:     GAATTGGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211092312|gb|FL268127.1|FL268127
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211089854|gb|FL268121.1|FL268121
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGG
EST: gi|149048849|gb|EE048352.2|EE048352
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|101392580|gb|EB818220.1|EB818220
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACG
EST: gi|148954443|gb|EC899866.2|EC899866
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|19351129|gb|BM895661.1|BM895661
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211094799|gb|FL268154.1|FL268154
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGG
EST: gi|211094794|gb|FL268149.1|FL268149
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGT
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGT
EST: gi|78105316|gb|DV523734.1|DV523734
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211097263|gb|FL268159.1|FL268159
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGT
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGT
EST: gi|149108187|gb|EE292532.2|EE292532
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATGTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|22491497|gb|BU051420.1|BU051420
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211092320|gb|FL268135.1|FL268135
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|22491303|gb|BU051226.1|BU051226
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|19436220|gb|BM952630.1|BM952630
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211094792|gb|FL268147.1|FL268147
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTG
EST: gi|74232622|gb|DT640536.1|DT640536
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|71432248|gb|DR813298.1|DR813298
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211094795|gb|FL268150.1|FL268150
EST:     G-CGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTC
EST: gi|149110918|gb|EE294416.2|EE294416
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|87152697|gb|DY397486.1|DY397486
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|76011040|gb|DT938210.1|DT938210
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCCGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211094796|gb|FL268151.1|FL268151
EST:     GGCGCTTCGGTCGGANCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGAC
EST: gi|149008168|gb|EE040356.2|EE040356
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211094801|gb|FL268156.1|FL268156
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|78110664|gb|DV529067.1|DV529067
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211092319|gb|FL268134.1|FL268134
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCG
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCG
EST: gi|78110665|gb|DV529068.1|DV529068
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|149110917|gb|EE294415.2|EE294415
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|149031748|gb|EE286370.2|EE286370
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|149086321|gb|EE175862.2|EE175862
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|67041238|gb|CO467493.1|CO467493
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|71432249|gb|DR813299.1|DR813299
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|211092322|gb|FL268137.1|FL268137
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCTC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|50328017|gb|CO523143.1|CO523143
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|50323900|gb|CO519026.1|CO519026
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|37418677|gb|CF647010.1|CF647010
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|111190431|gb|EE288567.1|EE288567
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
EST: gi|149046683|gb|EE048073.2|EE048073
EST:     GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAG                         CATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC
genomic: GGCGCTTCGGTCGGACCCCTCGTCAAGCTCGCCGTGGAATTTGACCCAAGgtaaccttgc ... tttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agttgtagtagtagacaaatgcttagatgacgaatggctgttttttttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCACCGGCGCGGCCATGGTGGCCAGGCGCAGGGAGTACCTCTACCTGGGTGGG
                                     ctgttttttttccctc  CT-rich tract
                                      tgtttttttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaaccttgcacttgtcgtcttgtctctcggaaattgcctgcgctgtgcgctgcttgattaagataataataatacagtaataatcaggattcgaacgctaccaggctggcaatgcgtcaccagcccgccataagttgtagtagtagacaaatgcttagatgacgaatggctgttttttttccctcagCATCCTGGTGACGGCGTTCGTGGGGACTGCCATCGCGTTCGCGTGCTTCACCGGCGCGGCCATGGTGGCCAGGCGCAGGGAGTACCTCTACCTGGGTGGG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG