1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagtaccaaatcaaatcaaatcaaatggaaacactgtagattgcttgatttctattaggccccttgtgatgccaaatttcccttcattgttggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAATTGAAGCTTCTCTACTACAAAACAATATGTTGGGTCCAGCTACGTTATT
species | Zea mays |
transcript | GRMZM2G025042_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTNCA-GCCCAAEST: gi|211220756|gb|FL455709.1|FL455709
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATT-CAAGCCCAA
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAAEST: gi|37388244|gb|CF631329.1|CF631329
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAAEST: gi|37386201|gb|CF630281.1|CF630281
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TGTTGGATCCTACGATGCATTTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAAEST: gi|88748691|gb|DY532832.1|DY532832
genomic: TGTTGTATCCTACGATGCA-TTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAAEST: gi|76014839|gb|DT942009.1|DT942009
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTTCGC-ATATTT GCTGGACCTCGGGTGAATTCCA-TGACTTTTATGTGCCATTCAAGCCCAA-EST: gi|211220755|gb|FL455708.1|FL455708
genomic: TCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTT-CGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAAEST: gi|148995059|gb|EE034374.2|EE034374
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAAEST: gi|76013875|gb|DT941045.1|DT941045
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAAEST: gi|211385110|gb|FL405372.1|FL405372
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTTCGC-ATATTT AEST: gi|211385110|gb|FL405372.1|FL405372
genomic: TCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTT-CGCCATATTTgtaagtacca ... ggagatgcag-
EST: TCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTTCGC-ATATTT AEST: gi|211385110|gb|FL405372.1|FL405372
genomic: TCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTT-CGCCATATTTgtaagtacca ... ggagatgcag-
EST: TCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTTCGC-ATATTT AEST: gi|211220757|gb|FL455710.1|FL455710
genomic: TCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTT-CGCCATATTTgtaagtacca ... ggagatgcag-
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAAEST: gi|78117325|gb|DV535712.1|DV535712
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
EST: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTT GCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
genomic: TTCCCTAGTCCATTCCATGTTGTATCCTACGATGCATTTTCGCCATATTTgtaagtacca ... ggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAA
gatttctattaggccccttgtgatgccaaatttcccttcattgttggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAATTGAAGCTTCTCTACTACAAAACAATATGTTGGGTCCAGCTACGTTATT
gcttgat putative branch site (score: 51)
aaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaccaaatcaaatcaaatcaaatggaaacactgtagattgcttgatttctattaggccccttgtgatgccaaatttcccttcattgttggagatgcagGCTGGACCTCCGGTGAATTCCAATGACTTTTATGTGCCATTCAAGCCCAAATTGAAGCTTCTCTACTACAAAACAATATGTTGGGTCCAGCTACGTTATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC