1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aggcatgtcgatagcaattaaaagttagaatgaaccctaaaagttgtagagtctatattttttaggcattgctcactagctatgctgttttgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTGATGATTTTGTCCAGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAG
species | Zea mays |
transcript | GRMZM2G025042_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|211443951|gb|FL410271.1|FL410271
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|148953492|gb|EE152999.2|EE152999
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|28910260|gb|CB331350.1|CB331350
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|211223495|gb|FL386114.1|FL386114
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCEST: gi|76014839|gb|DT942009.1|DT942009
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGC
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|211444194|gb|FL421114.1|FL421114
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|211066457|gb|FL305317.1|FL305317
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|211220755|gb|FL455708.1|FL455708
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|148995059|gb|EE034374.2|EE034374
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|211385110|gb|FL405372.1|FL405372
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|211116996|gb|FL414299.1|FL414299
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|211149178|gb|FL419649.1|FL419649
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTEST: gi|78121560|gb|DV539944.1|DV539944
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTTACGGCAATTGGCACTGGAGGEST: gi|78117325|gb|DV535712.1|DV535712
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTT-ACAGCAATTGGCACTGGAGG
EST: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAG GTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
genomic: GTACTGTGACTGACGATGCAAGTGATGAATGGCTTGTTCTGGATCAGAAGgtgtgtctca ... tgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGT
gtagagtctatattttttaggcattgctcactagctatgctgttttgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTGATGATTTTGTCCAGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAG
tgctcac putative branch site (score: 104)
ttttgcttc putative PPT
tctatatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aggcatgtcgatagcaattaaaagttagaatgaaccctaaaagttgtagagtctatattttttaggcattgctcactagctatgctgttttgcttcacagGTAAATTCCTACCCCACAGATAGAGGATTTACAGCAATTGGCACTGGAGGTGATGATTTTGTCCAGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
aggcatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cactagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt