1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tataagtacagcctgcagcaaatagaatgaattctttcagttccttttcacaatcattctcttgatttgtttcactgctattcatatgtatcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG
species | Zea mays |
transcript | GRMZM2G025042_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|211443951|gb|FL410271.1|FL410271
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|148953492|gb|EE152999.2|EE152999
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|28910260|gb|CB331350.1|CB331350
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|88748691|gb|DY532832.1|DY532832
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTG-TCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|76014839|gb|DT942009.1|DT942009
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|211444194|gb|FL421114.1|FL421114
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|211220755|gb|FL455708.1|FL455708
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|148995059|gb|EE034374.2|EE034374
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|76013875|gb|DT941045.1|DT941045
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|211385110|gb|FL405372.1|FL405372
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|211149178|gb|FL419649.1|FL419649
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACEST: gi|78117325|gb|DV535712.1|DV535712
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
EST: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAG GGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
genomic: AGTCAATGGTAGTTGCTGTTGAATCTGTTCTTCAAGAATCAATTCCCAAGgttagttttt ... tcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAAC
tttcacaatcattctcttgatttgtttcactgctattcatatgtatcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG
tcttgat putative branch site (score: 77)
tattcatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tataagtacagcctgcagcaaatagaatgaattctttcagttccttttcacaatcattctcttgatttgtttcactgctattcatatgtatcttgaacagGGCCGGGTATCTCAGAAATTATCTTCAAGAGGGAAATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - ctgcagc
- - - - - - - - - - - - - - - - - - - - - - - - - - - cattctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctgctat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgta