1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...taatatgtccgaaaatttctagaaacttatttattatgggacggagggagtagatataaaggttaccccttttattgaagttctgcctgctgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCTTATGAAGTGCAATTTCATGTCCTGGATGTTCCCTAGTCCATTCCATGT
species | Zea mays |
transcript | GRMZM2G025042_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AATATGTTTCTGTAAACATTGNGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|211443951|gb|FL410271.1|FL410271
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATA-CAGGATGAAATACTTCEST: gi|148953492|gb|EE152999.2|EE152999
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|28910260|gb|CB331350.1|CB331350
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|37388244|gb|CF631329.1|CF631329
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|88748691|gb|DY532832.1|DY532832
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|76014839|gb|DT942009.1|DT942009
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|211444194|gb|FL421114.1|FL421114
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGNGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAEST: gi|211220755|gb|FL455708.1|FL455708
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAA
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|148995059|gb|EE034374.2|EE034374
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|76013875|gb|DT941045.1|DT941045
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|211385110|gb|FL405372.1|FL405372
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCEST: gi|211149178|gb|FL419649.1|FL419649
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAG-ATGAAATACTTCEST: gi|211220757|gb|FL455710.1|FL455710
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: CTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAAT-CTTCEST: gi|78117325|gb|DV535712.1|DV535712
genomic: CTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
EST: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAG GTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
genomic: AATATGTTTCTGTAAACATTGGGCCAATTCGTGTTGTTTCTAGTGAGCAGgtgacaagtt ... tgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTC
gggagtagatataaaggttaccccttttattgaagttctgcctgctgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCTTATGAAGTGCAATTTCATGTCCTGGATGTTCCCTAGTCCATTCCATGT
ctgcttttc CT-rich tract
tagatataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatatgtccgaaaatttctagaaacttatttattatgggacggagggagtagatataaaggttaccccttttattgaagttctgcctgctgcttttcagGTCCAAGCTGTGTATCGTGCCATGAGAAGAGATAACAGGATGAAATACTTCTTATGAAGTGCAATTTCATGTCCTGGATGTTCCCTAGTCCATTCCATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgcctgc