1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tcattttgagccatgtgctgtgtttcaatgggtataggcgtatagcacatatgggaccagagccctgacctaactgtaaccttatttttttttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAGATGGTGATATTTTGGATGGCCAAGATGCACTGCCTGATGTGCCAATGA
species | Zea mays |
transcript | GRMZM2G015875_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|60336733|gb|DN203706.1|DN203706
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|211089059|gb|FL455583.1|FL455583
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|45847919|gb|CN071862.1|CN071862
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|20512914|gb|BQ280100.1|BQ280100
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|60399051|gb|DN231867.1|DN231867
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|31349416|gb|CD433773.1|CD433773
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTEST: gi|60350644|gb|DN217617.1|DN217617
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCT
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|32838004|gb|CD977682.1|CD977682
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|67014458|gb|CO443207.1|CO443207
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|9953319|gb|BE639902.1|BE639902
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAEST: gi|14244160|gb|BG842165.2|BG842165
genomic: TATCTGAATCTGCAGACTACGATGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
EST: TGCATCCCAGTTGCATGAGTTTTCCCAG GTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
genomic: TGCATCCCAGTTGCATGAGTTTTCCCAGgtaataccct ... tttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAA
cacatatgggaccagagccctgacctaactgtaaccttatttttttttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAGATGGTGATATTTTGGATGGCCAAGATGCACTGCCTGATGTGCCAATGA
ccttatttttttttat CT-rich tract
taactgtaaccttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcattttgagccatgtgctgtgtttcaatgggtataggcgtatagcacatatgggaccagagccctgacctaactgtaaccttatttttttttattttagGTTGAAGTTGGTGATGCCCATGCTGTAGACGGTGAGGGTGCTGGTGAGGAAGATGGTGATATTTTGGATGGCCAAGATGCACTGCCTGATGTGCCAATGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - gtgctgt
- - - - - - - - - - - - - - - - - - - - - - gcacata
- - - - - - - - - - - - - - - - - - - - - - - - - - -ggaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agccctg