1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacagttttactatgtcttgcaaatccatgttctgttgtgcttagcatgtagttgacttgttatatttgtttcattgttctaatatgtttagGCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGAATGGGAGAAAAAGCTGAAGGAAAGTCAGAATAGACTTAATGAGTTGCAG
species | Zea mays |
transcript | GRMZM2G015875_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAAGCTCGTCAACGTAGACTGGAGAAGGAGAAACTGTATTTTGAGACAGA GCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGAEST: gi|18176545|gb|BM351478.1|BM351478
genomic: GAAGCTCGTCAACGTAGACTGGAGAAGGAGAAACTGTATTTTGAGACAGAgtacagtttt ... atatgtttagGCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGA
EST: GAAGCTCGTCAACGTAGACTGGAGAAGGAGAAACTGTATTTTGAGACAGA GCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGAEST: gi|18171138|gb|BM340978.1|BM340978
genomic: GAAGCTCGTCAACGTAGACTGGAGAAGGAGAAACTGTATTTTGAGACAGAgtacagtttt ... atatgtttagGCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGA
EST: GGAGAAACTGTATTTTGAGACAGA GCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGAEST: gi|18172493|gb|BM347881.1|BM347881
genomic: GGAGAAACTGTATTTTGAGACAGAgtacagtttt ... atatgtttagGCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGA
EST: GAAGCTCGTCAACGTAGACTGGAGAAGGAGAAACTGTATTTTGAGACAGA GCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGA
genomic: GAAGCTCGTCAACGTAGACTGGAGAAGGAGAAACTGTATTTTGAGACAGAgtacagtttt ... atatgtttagGCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGA
gtgcttagcatgtagttgacttgttatatttgtttcattgttctaatatgtttagGCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGAATGGGAGAAAAAGCTGAAGGAAAGTCAGAATAGACTTAATGAGTTGCAG
ttctaat putative branch site (score: 232)
ttatatttgtttcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacagttttactatgtcttgcaaatccatgttctgttgtgcttagcatgtagttgacttgttatatttgtttcattgttctaatatgtttagGCGGAAGGCCCGAGAAAAGCAACTTAAGGAGCAGGAGGAATCACTGCAGGAATGGGAGAAAAAGCTGAAGGAAAGTCAGAATAGACTTAATGAGTTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA