1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgcctttccactcctctagctgtcatattcctttcataatcataaacttttgatgacatactaaatatttccttactgattgttttgttgaatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTTACATCTGAGAAAAAGATAACAGATGCTCAGTCTCTTGAGGCTAGTTTGG
species | Zea mays |
transcript | GRMZM2G015875_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: GAGAAGCAATGTGTCGCTGAT CTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTTEST: gi|87156597|gb|DY401386.1|DY401386
genomic: GAGAAGCAATGTGTCGCTGATgtgagttggt ... aatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTT
EST: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGAT CTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATTGCTGAGGTTAAATTTEST: gi|78022352|gb|DV490739.1|DV490739
genomic: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGATgtgagttggt ... aatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTT
EST: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGAT CTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTTEST: gi|18176545|gb|BM351478.1|BM351478
genomic: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGATgtgagttggt ... aatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTT
EST: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGAT CTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTTEST: gi|18172493|gb|BM347881.1|BM347881
genomic: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGATgtgagttggt ... aatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTT
EST: AGGAGAACATGCGGAAAGCACTAGGTGTTGAAAAGCAATGTGTCGCTGAT CTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTTEST: gi|5740429|gb|AI948119.1|AI948119
genomic: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGATgtgagttggt ... aatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTT
EST: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGAT CTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTTEST: gi|23199583|gb|BU582148.1|BU582148
genomic: AGGAGAACATGCGGAAAGCACTAGGTGTTGAGAAGCAATGTGTCGCTGATgtgagttggt ... aatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTT
EST: GAAGCAATGTGTCGCTGAT CTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATTGCTGAGGTTAAATTT
genomic: GAAGCAATGTGTCGCTGATgtgagttggt ... aatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTT
acttttgatgacatactaaatatttccttactgattgttttgttgaatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTTACATCTGAGAAAAAGATAACAGATGCTCAGTCTCTTGAGGCTAGTTTGG
acatactaaatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcctttccactcctctagctgtcatattcctttcataatcataaacttttgatgacatactaaatatttccttactgattgttttgttgaatgctgcagCTTGAAAAAGCCTTGCGTGATATACGAGCAGAGATAGCTGAGGTTAAATTTACATCTGAGAAAAAGATAACAGATGCTCAGTCTCTTGAGGCTAGTTTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
tgccttt
- - - -ccactcc
- - - - - - - - - gctgtca
- - - - - - - - - - - - - - - ctttcat
- - - - - - - - - - - - - - - - - - - - - - - - tttgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tttgttg