1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gttgttttttcttgataattagggtttcctttggtcggtttcttggtaactagggttttggtgtacgcagcatggtttcgtaacccttctggtgttgcagGGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCAAGAAGAATTGATGTTTACTCCGCAGGGCAAAGGATGGACCGGCTGGTCG
species | Zea mays |
transcript | GRMZM2G015875_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CTCGCCTCTGCGCCGCGTCCGGCCGCCGGTAGCGGGCCGGTCACTTACCG GGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCAEST: gi|211310289|gb|FL341190.1|FL341190
genomic: CTCGCCTCTGCGCCGCGTCCGGCCGCCGGTAGCGGGCCGGTCACTTACCGgtgagggctc ... ggtgttgcagGGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCA
EST: CTCGCCTCTGCGCCGCGTCCGGCCGCCGGTAGCGGGCCGGTCACTTACCG GGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCAEST: gi|26560003|gb|CA832238.1|CA832238
genomic: CTCGCCTCTGCGCCGCGTCCGGCCGCCGGTAGCGGGCCGGTCACTTACCGgtgagggctc ... ggtgttgcagGGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCA
EST: CTCGCCTCTGCGCCGCG-CCGGCCGCCGG-AGCGGGCCGG-CACTTACCG GGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCA
genomic: CTCGCCTCTGCGCCGCGTCCGGCCGCCGGTAGCGGGCCGGTCACTTACCGgtgagggctc ... ggtgttgcagGGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCA
gtaactagggttttggtgtacgcagcatggtttcgtaacccttctggtgttgcagGGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCAAGAAGAATTGATGTTTACTCCGCAGGGCAAAGGATGGACCGGCTGGTCG
tcgtaac putative branch site (score: 171)
cccttctg CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgttttttcttgataattagggtttcctttggtcggtttcttggtaactagggttttggtgtacgcagcatggtttcgtaacccttctggtgttgcagGGAGGGAGAGGTGCTTTGGTTCCTGGATGAGCTGTGAAGGAACTGGGAGCAAGAAGAATTGATGTTTACTCCGCAGGGCAAAGGATGGACCGGCTGGTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
gttgttt
- - - -tttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttggt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagcat