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...taaacttgtaataatatcccatgatttggcattttgacttcatttagctgaactaactgtaacctaacttatgaccccctgtgttaatgtcttaatgaagCTTCTGTAGCCAAGGGTGGGCTGAGGGAGTCTTTTGCAGATCCAGGGTTAGGTTATGTTGATATTCCAAATGCACAGATAAGAAAG
species | Zea mays |
transcript | GRMZM2G015132_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TACTGGTCCTGATGGTCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CTTCTGTAGCCAAGGGTGGGCTGAGGGAGTCTTTTGCAGATCCAGGGTTAGEST: gi|32840355|gb|CD980036.1|CD980036
genomic: TACTGGTCCTGATGGTCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... cttaatgaagCTTCTGTAGCCAAGGGTGGGCTGAGGGAGTCTTTTGCAGATCCAGGGTTAG
EST: CCTGATGGCCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CTTCTGTAGCCAAGGGTGGGTTGAGGGAGGCTTTTGCAGATCCAGGGTTAGEST: gi|32938642|gb|CF043461.1|CF043461
genomic: CCTGATGGTCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... cttaatgaagCTTCTGTAGCCAAGGGTGGGCTGAGGGAGTCTTTTGCAGATCCAGGGTTAG
EST: TACTGGTCCTGATGGCCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CTTCTGTAGCCAAGGGTGGGTTGAGGGAGGCTTTTGCAGATCCAGGGTTAGEST: gi|32932311|gb|CF037123.1|CF037123
genomic: TACTGGTCCTGATGGTCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... cttaatgaagCTTCTGTAGCCAAGGGTGGGCTGAGGGAGTCTTTTGCAGATCCAGGGTTAG
EST: ACTGGTCCTGATGGCCGTATTTTGAAGGCAGACATTGAAGATTACTTGG CTTCTGTAGCCAAGGGTGGGTTGAGGGAGGCTTTTGCAGATCCAGGGTTAG
genomic: ACTGGTCCTGATGGTCGTATTTTGAAGGCAGACATTGAAGATTACTTGGgtgagttatt ... cttaatgaagCTTCTGTAGCCAAGGGTGGGCTGAGGGAGTCTTTTGCAGATCCAGGGTTAG
agctgaactaactgtaacctaacttatgaccccctgtgttaatgtcttaatgaagCTTCTGTAGCCAAGGGTGGGCTGAGGGAGTCTTTTGCAGATCCAGGGTTAGGTTATGTTGATATTCCAAATGCACAGATAAGAAAG
taacttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taaacttgtaataatatcccatgatttggcattttgacttcatttagctgaactaactgtaacctaacttatgaccccctgtgttaatgtcttaatgaagCTTCTGTAGCCAAGGGTGGGCTGAGGGAGTCTTTTGCAGATCCAGGGTTAGGTTATGTTGATATTCCAAATGCACAGATAAGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - -catgatt
- - - - - - - - - - - - - - - - - - - ttcattt
- - - - - - - - - - - - - - - - - - - - - - - gctgaac