1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
gtatgtttctaacctaatttgtgatctacaagccctttttgttggtgaacagcactgattcctttattacttctaactatgagttccttgtgtcactctctaatcaacagGTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAATATCAATTAATGATCTTGTCATCAAG
species | Zea mays |
transcript | GRMZM2G015132_T01 |
intron # | 11 |
splice site | 3' |
intron type | U2 |
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCA GTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|74235054|gb|DT642968.1|DT642968
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCAgtatgtttct ... taatcaacagGTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCA GTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|32840355|gb|CD980036.1|CD980036
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCAgtatgtttct ... taatcaacagGTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCA GTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAATEST: gi|32938642|gb|CF043461.1|CF043461
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCAgtatgtttct ... taatcaacagGTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCA GTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTG-AAAGAAAATEST: gi|32932311|gb|CF037123.1|CF037123
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCAgtatgtttct ... taatcaacagGTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
EST: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCA GTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
genomic: ATTCCTCATTACTACTTGACAGTAGATGCACGTGTTGACAAACTTGTCCAgtatgtttct ... taatcaacagGTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAAT
tgattcctttattacttctaactatgagttccttgtgtcactctctaatcaacagGTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAATATCAATTAATGATCTTGTCATCAAG
tcactctct CT-rich tract
tttattacttctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtttctaacctaatttgtgatctacaagccctttttgttggtgaacagcactgattcctttattacttctaactatgagttccttgtgtcactctctaatcaacagGTTGCGAGGTGAACTGAACCCACTGCAGGATGCTTCTGGTGGAAAGAAAATATCAATTAATGATCTTGTCATCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA